Rh5DG498400

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000228
Physical Location & Seq
Forward (+)
78215730 .. 78216658
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG498400.1

Sequence Viewer

Length: 504 bp
ATGGATTCCGTCACCATAGGACAACCAACCGGCGTCTGCCACATAGTAGCCATGCCCTATCCCGGCCGGGGTCACATAAACCCTATGATGAACCTCTGCAACTTGCTAGTTTCCCAAAAGAGTGTTATTCTAATAACCTTCGTCCTCACAGAAGAGTGGCTCGGCTTAATTGGGTCTGAAGACAAGCCGGACAACATTCGCTTTGCCACAATCCCTAATGTGGTCCCATCGGAGAAGGAACGTGCCGCCGATATGGTTGCGTTCTTTGAAGCCGTCATGACCAAAATGGAAGTTCCGTTTGAGCAACTCCTGGCGGTTCTCGAGCCACCACCTAGTGCCATTGTGGCTGACACTTTCCTGCCTTGGGCAGTCGCCGTCGGCAACCGGAGGAACATTTCTTCGGCGTCATTTTGGCCAATGACAGGGTCCAATTTCTCCGTGTTCCAGCATTTTCATCTCTTCCAGCAAAATGGACACTTCCCAATTGATTTGTTAGGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

167

Amino Acids

18.48

Weight (kDa)

5.11

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 246, 314
AcoI YGGCCR 2 cut(s) 64, 413
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 33, 404
AdeI CACNNNGTG 1 cut(s) 335
AfiI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 64, 413
AspS9I GGNCC 2 cut(s) 223, 426
AsuC2I CCSGG 2 cut(s) 63, 68
AsuHPI GGTGA 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 223, 426
BalI TGGCCA 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 1 cut(s) 235
BceAI ACGGC 2 cut(s) 257, 359
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 2 cut(s) 63, 68
BfaI CTAG 2 cut(s) 107, 333
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 3 cut(s) 63, 68, 311
Bme18I GGWCC 2 cut(s) 223, 426
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 223, 426
BmiI GGNNCC 2 cut(s) 225, 427
BmrFI CCNGG 3 cut(s) 63, 68, 311
BpiI GAAGAC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 63, 68
BsaHI GRCGYC 2 cut(s) 33, 404
BsaJI CCNNGG 2 cut(s) 67, 362
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
Bse118I RCCGGY 1 cut(s) 29
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 67, 362
BseLI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BseX3I CGGCCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 66, 415
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 5 cut(s) 30, 63, 67, 188, 385
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 66, 415
BsoBI CYCGRG 1 cut(s) 320
BspACI CCGC 2 cut(s) 246, 314
BspANI GGCC 2 cut(s) 66, 415
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 225, 427
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 67, 362
BssNI GRCGYC 2 cut(s) 33, 404
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 147, 464
BstACI GRCGYC 2 cut(s) 33, 404
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 61, 66, 309
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 470
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 2 cut(s) 66, 415
CciI TCATGA 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 223, 426
CseI GACGC 2 cut(s) 22, 393
CviAII CATG 2 cut(s) 52, 277
CviJI RGCY 9 cut(s) 50, 66, 160, 165, 187, 272, 325, 347, 415
CviKI_1 RGCY 9 cut(s) 50, 66, 160, 165, 187, 272, 325, 347, 415
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 64, 413
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 147, 464
EarI CTCTTC 2 cut(s) 147, 464
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 223, 426
Eco52I CGGCCG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 55, 280
FaiI YATR 7 cut(s) 17, 44, 53, 77, 86, 254, 278
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 51, 276
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 107, 333
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 66, 415
HapII CCGG 5 cut(s) 30, 63, 67, 188, 385
HgaI GACGC 2 cut(s) 22, 393
Hin1I GRCGYC 2 cut(s) 33, 404
Hin1II CATG 2 cut(s) 55, 280
HinfI GANTC 1 cut(s) 5
HpaII CCGG 5 cut(s) 30, 63, 67, 188, 385
HphI GGTGA 1 cut(s) 4
Hpy188I TCNGA 2 cut(s) 178, 232
Hpy188III TCNNGA 2 cut(s) 277, 320
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 148, 229
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 241
Hsp92I GRCGYC 2 cut(s) 33, 404
Hsp92II CATG 2 cut(s) 55, 280
MaeI CTAG 2 cut(s) 107, 333
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 10, 71
MboII GAAGA 4 cut(s) 164, 191, 390, 451
MfeI CAATTG 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 3 cut(s) 168, 430, 483
MluNI TGGCCA 1 cut(s) 415
MnlI CCTC 3 cut(s) 104, 155, 381
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 415
MspI CCGG 5 cut(s) 30, 63, 67, 188, 385
MspR9I CCNGG 3 cut(s) 63, 68, 311
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 2 cut(s) 63, 68
NlaIII CATG 2 cut(s) 55, 280
NlaIV GGNNCC 2 cut(s) 225, 427
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 10, 71
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 225, 427
PspPI GGNCC 2 cut(s) 223, 426
PsyI GACNNNGTC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 223, 426
ScrFI CCNGG 3 cut(s) 63, 68, 311
SetI ASST 5 cut(s) 96, 140, 244, 334, 499
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 223, 426
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 168, 430, 483
SsiI CCGC 2 cut(s) 246, 314
SspMI CTAG 2 cut(s) 107, 333
StyD4I CCNGG 3 cut(s) 61, 66, 309
StyI CCWWGG 1 cut(s) 362
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 168, 430, 483
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 2 cut(s) 10, 71
Tsp45I GTSAC 2 cut(s) 10, 71
TspDTI ATGAA 2 cut(s) 104, 443
TspGWI ACGGA 2 cut(s) 285, 427
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 223, 426
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 2 cut(s) 107, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.