Rorug05G0412200

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000228
Physical Location & Seq
Forward (+)
56967214 .. 56967830
617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0412200.1

Sequence Viewer

Length: 564 bp
ATGTACACTGCAACTGCTTTGTCAAAGGCAGGCATAACATGCCGAGGCAACAAAACAGAAAACATAATGGACATGCAATTCGAAGAGGGCTGGCTATTCTGCAATGGAGTTCTTAAGATTCCGCAGCTCAACGTCGGAATGCTAACCGAATCATTATTCAGGAACCTCATAGCTTTTGAGCAATGCTATCATGGTATTTCAAATGAAATAACATCTTACGCTGTGTTTATGGATAACCTCATCTCTTCCCAAGAAGATATGGAATTACTTTGTAAGGCAAAAGTAATAGGTAACTGGCTGAGCGATGAAGAGGGTTGCAATTTCTTCAACAACCTTTACAAAGGCATCCCGCGCACCAAGTTCTACTATGGTCCTCTCTGCAAGAAAGTGAAGAAACGTTACGAAATGAAATGGTATACATATGTGGCTTCATTCAAGACTCAAAAGCTTTCTAATCCATGGGCGGTGCTTGCTTTTTGCACAGCTCTTATCCTTCTCGTTCTCCAGCTATGGAACAGCACAAATAGCCTCCGATCCTTCAGGAAGCAAAACCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

187

Amino Acids

21.63

Weight (kDa)

8.92

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 168 2.4e-47 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 416
AccII CGCG 1 cut(s) 352
AciI CCGC 3 cut(s) 122, 350, 464
AclI AACGTT 1 cut(s) 397
AclWI GGATC 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 523
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 3 cut(s) 201, 328, 436
AluBI AGCT 5 cut(s) 127, 173, 448, 485, 508
AluI AGCT 5 cut(s) 127, 173, 448, 485, 508
AlwI GGATC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 371
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BbvI GCAGC 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 299
Bpu14I TTCGAA 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 43, 458, 553
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 109, 188
BseDI CCNNGG 3 cut(s) 43, 458, 553
BseGI GGATG 1 cut(s) 345
BseMI GCAATG 2 cut(s) 109, 188
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 352
BsmI GAATGC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 533
Bsp1720I GCTNAGC 1 cut(s) 299
Bsp19I CCATGG 2 cut(s) 458, 553
BspACI CCGC 3 cut(s) 122, 350, 464
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 528
BspT104I TTCGAA 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 109, 188
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 43, 458, 553
BssMI GATC 1 cut(s) 533
BssNAI GTATAC 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 458, 553
Bst1107I GTATAC 1 cut(s) 417
Bst6I CTCTTC 3 cut(s) 78, 250, 303
BstAFI CTTAAG 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 31, 92, 471
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 458, 553
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 536
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 4 cut(s) 39, 351, 470, 525
BstNSI RCATGY 2 cut(s) 42, 76
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 417
BtgI CCRYGG 2 cut(s) 458, 553
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 3 cut(s) 31, 92, 471
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 39, 73, 191, 459, 554
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 299
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
Eam1104I CTCTTC 3 cut(s) 78, 250, 303
EarI CTCTTC 3 cut(s) 78, 250, 303
Eco130I CCWWGG 2 cut(s) 458, 553
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 458, 553
ErhI CCWWGG 2 cut(s) 458, 553
FaeI CATG 5 cut(s) 42, 76, 194, 462, 557
FatI CATG 5 cut(s) 38, 72, 190, 458, 553
FauI CCCGC 1 cut(s) 357
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 125
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 488
HhaI GCGC 1 cut(s) 354
Hin1II CATG 5 cut(s) 42, 76, 194, 462, 557
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 118, 149, 439
Hpy166II GTNNAC 2 cut(s) 6, 417
Hpy188I TCNGA 2 cut(s) 137, 533
Hpy188III TCNNGA 3 cut(s) 160, 436, 541
Hpy8I GTNNAC 2 cut(s) 6, 417
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 503, 547
HpyCH4IV ACGT 2 cut(s) 132, 397
HpyCH4V TGCA 6 cut(s) 11, 76, 102, 318, 381, 480
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 351, 470, 525
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 132, 397
Hsp92II CATG 5 cut(s) 42, 76, 194, 462, 557
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 533
LpnPI CCDG 6 cut(s) 15, 76, 145, 280, 518, 526
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 354
MaeII ACGT 2 cut(s) 132, 397
MaeIII GTNAC 2 cut(s) 290, 398
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MboII GAAGA 6 cut(s) 95, 237, 266, 316, 320, 403
MluCI AATT 3 cut(s) 77, 263, 319
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 7 cut(s) 38, 79, 176, 248, 304, 384, 539
MseI TTAA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 4 cut(s) 39, 351, 470, 525
NcoI CCATGG 2 cut(s) 458, 553
NdeI CATATG 1 cut(s) 421
NdeII GATC 1 cut(s) 533
NlaIII CATG 5 cut(s) 42, 76, 194, 462, 557
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 68
NspI RCATGY 2 cut(s) 42, 76
NspV TTCGAA 1 cut(s) 81
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 118, 149
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp1406I AACGTT 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 371
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 77, 263, 319
SsiI CCGC 3 cut(s) 122, 350, 464
StyI CCWWGG 2 cut(s) 458, 553
TaiI ACGT 2 cut(s) 135, 400
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 77, 263, 319
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 118, 149
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 219, 321, 420, 422
TspRI CASTG 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 371
XceI RCATGY 2 cut(s) 42, 76
XmiI GTMKAC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.