Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

3535925 .. 3536401

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATACCTCCTCCAACGTCCTCCATGTAGTGGCGGTGCCTTATCCTGGTAGAGGCCACATCAACCCCATCATCAACCTCTGCAAATTACTAGCTTCCAGGAAAAACGACATTCAAATCACCGTCGTCGTCACCGAAGAGTGGCTTGGCTTCATAGGCTCCGACCCGAAACCCAATAACATCAGCTTCCGTACCATACCCAACGTCCTTCCCTCTGAGCTAGTTCGTGGCGCCAACTATCCCGCCTTCTACGAAGCCGTGATGACGAAGATGGAAGCTCCGTTCGAAAAGCTACTGGATCAAATTCATCCTCCGGTGACCGCCATTATAGCCGACATCGAGCTTCTCTGGGCAGTTCCCGCAGGCCGCTGGAGAAATATTCCGGTGGCTTCGCTTTCCACACTGTCGGCGTCGGTTTTTGGTCTCCTCTTCCGAAATAGGGAGCTGAATTTATTAGGTAACAGTAATACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

6.83

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 230
AccB7I	CCANNNNNTGG	1 cut(s)	31
AciI	CCGC	5 cut(s)	35, 243, 321, 360, 367
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	303, 448
AcyI	GRCGYC	2 cut(s)	231, 410
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	5 cut(s)	31, 47, 53, 141, 439
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	46, 98
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	7 cut(s)	95, 186, 220, 278, 292, 343, 445
AluI	AGCT	7 cut(s)	95, 186, 220, 278, 292, 343, 445
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	55, 364
ApoI	RAATTY	2 cut(s)	303, 448
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	112, 124, 328
AsuII	TTCGAA	1 cut(s)	285
BanI	GGYRCC	2 cut(s)	37, 230
BccI	CCATC	2 cut(s)	77, 265
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	48, 100
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	92, 221
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	367
BlsI	GCNGC	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	48, 100
BmiI	GGNNCC	3 cut(s)	39, 160, 232
BmrFI	CCNGG	2 cut(s)	48, 100
BpmI	CTGGAG	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	285
BsaHI	GRCGYC	2 cut(s)	231, 410
BsaI	GGTCTC	1 cut(s)	428
BsaWI	WCCGGW	2 cut(s)	313, 382
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 47, 53, 141, 439
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	48, 100
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	5 cut(s)	31, 47, 53, 141, 439
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	57, 366
BshNI	GGYRCC	2 cut(s)	37, 230
BsiSI	CCGG	2 cut(s)	314, 383
BslI	CCNNNNNNNGG	5 cut(s)	31, 47, 53, 141, 439
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	57, 366
Bso31I	GGTCTC	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	5 cut(s)	35, 243, 321, 360, 367
BspANI	GGCC	2 cut(s)	57, 366
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	39, 160, 232
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	37, 230
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	2 cut(s)	231, 410
Bst2UI	CCWGG	2 cut(s)	48, 100
Bst4CI	ACNGT	3 cut(s)	124, 405, 464
Bst6I	CTCTTC	2 cut(s)	132, 434
BstACI	GRCGYC	2 cut(s)	231, 410
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	316
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 329, 359
BstNI	CCWGG	2 cut(s)	48, 100
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	46, 98
BsuRI	GGCC	2 cut(s)	57, 366
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	233
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	132, 434
EarI	CTCTTC	2 cut(s)	132, 434
Eco31I	GGTCTC	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	46, 98
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	1 cut(s)	29
FaiI	YATR	4 cut(s)	27, 155, 197, 329
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	25
FauI	CCCGC	2 cut(s)	250, 367
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	367
FspBI	CTAG	2 cut(s)	92, 221
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	57, 366
HapII	CCGG	2 cut(s)	314, 383
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	2 cut(s)	231, 410
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	314, 383
HphI	GGTGA	3 cut(s)	112, 124, 328
Hpy188I	TCNGA	3 cut(s)	163, 217, 434
Hpy99I	CGWCG	3 cut(s)	128, 131, 415
HpyAV	CCTTC	2 cut(s)	218, 256
HpyCH4III	ACNGT	3 cut(s)	124, 405, 464
HpyCH4IV	ACGT	2 cut(s)	18, 204
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 329, 359
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	18, 204
Hsp92I	GRCGYC	2 cut(s)	231, 410
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	164, 283, 442
MaeI	CTAG	2 cut(s)	92, 221
MaeII	ACGT	2 cut(s)	18, 204
MaeIII	GTNAC	3 cut(s)	130, 316, 458
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	149, 280, 421
MluCI	AATT	3 cut(s)	86, 303, 448
Mly113I	GGCGCC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	39, 186
MnlI	CCTC	8 cut(s)	19, 22, 32, 47, 89, 223, 321, 437
MseI	TTAA	1 cut(s)	475
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	2 cut(s)	314, 383
MspR9I	CCNGG	2 cut(s)	48, 100
MvaI	CCWGG	2 cut(s)	48, 100
MwoI	GCNNNNNNNGC	3 cut(s)	156, 329, 359
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	3 cut(s)	39, 160, 232
NmuCI	GTSAC	2 cut(s)	130, 316
NspV	TTCGAA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	368
PluTI	GGCGCC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	46, 98
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	2 cut(s)	46, 98
PspN4I	GGNNCC	3 cut(s)	39, 160, 232
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	48, 100
SfoI	GGCGCC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	285
Sse9I	AATT	3 cut(s)	86, 303, 448
SsiI	CCGC	5 cut(s)	35, 243, 321, 360, 367
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	92, 221
StyD4I	CCNGG	2 cut(s)	46, 98
TaaI	ACNGT	3 cut(s)	124, 405, 464
TaiI	ACGT	2 cut(s)	21, 207
TaqI	TCGA	2 cut(s)	285, 339
TasI	AATT	3 cut(s)	86, 303, 448
TauI	GCSGC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	130, 316
Tsp45I	GTSAC	2 cut(s)	130, 316
TspDTI	ATGAA	2 cut(s)	142, 296
TspGWI	ACGGA	2 cut(s)	179, 270
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	2 cut(s)	303, 448
XspI	CTAG	2 cut(s)	92, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.