Rh5BG487500

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000228
Physical Location & Seq
Forward (+)
77742215 .. 77742760
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG487500.1

Sequence Viewer

Length: 546 bp
ATGGGAAGCTTTCTTTCAGTGACTTGTGCCCAAATGGATGAGATTGCAGCCGGTTTGTGCAAGAGCAGTGTTCGATTCTTTTGGGTAGCTCGTGGTGAAATCGGTAGGTTACAAGAGGTTTGTGGTGATAAGGGGTTAGTAGTGCCCTGGTGTGACCAATTGCGAGTATTATGTCATCCTTGTATTGGGGGGTTTTTGACTCCTTGTGGGTGGAACTCAGTTAGCGAAGGTGTTTTCTCTAGTGTTCCTTTTCTTACTTTCCCCATGATTTTCGATCAAGGCCTGAACAGTAAGATGGTTGTGGAGGATTGGAAGATTGGATGGAAGGTGAAGAGACTTGAGGCGAAAATCGACCAGGTGAAAATTGTAGGGTTGGTGAAGAAATTCATGGATTTGGAGGATGGTGAAGGGAAAGAGACGAGGAGTAGAGTAAGAGAATTACAGCATACATGGAAGGGTGCCATTGAAGAAGGTGGATCCTTTAAAACCAACTTCGGTGCCTTCATCAGAGATTTCTTGCAATGCCATGCACATCAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

181

Amino Acids

20.28

Weight (kDa)

7.56

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 105 1.6e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 458, 497
AclWI GGATC 2 cut(s) 471, 484
AcsI RAATTY 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 467
AjnI CCWGG 2 cut(s) 146, 354
AluBI AGCT 2 cut(s) 9, 89
AluI AGCT 2 cut(s) 9, 89
Alw26I GTCTC 2 cut(s) 328, 410
AlwI GGATC 2 cut(s) 471, 484
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 383
AsuHPI GGTGA 6 cut(s) 107, 137, 340, 370, 388, 416
BaeGI GKGCMC 2 cut(s) 31, 147
BamHI GGATCC 1 cut(s) 476
BanI GGYRCC 2 cut(s) 458, 497
BauI CACGAG 1 cut(s) 90
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 289, 315, 395
BciT130I CCWGG 2 cut(s) 148, 356
BcoDI GTCTC 2 cut(s) 328, 410
BfaI CTAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 148, 356
BmiI GGNNCC 3 cut(s) 460, 478, 499
BmrFI CCNGG 2 cut(s) 148, 356
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 2 cut(s) 148, 356
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 4 cut(s) 43, 175, 326, 406
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 436
BseSI GKGCMC 2 cut(s) 31, 147
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 458, 497
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 2 cut(s) 328, 410
BsmBI CGTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 31, 147
Bsp143I GATC 2 cut(s) 274, 476
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 460, 478, 499
BspPI GGATC 2 cut(s) 471, 484
BspT107I GGYRCC 2 cut(s) 458, 497
BsrDI GCAATG 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 274, 476
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 148, 356
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 4 cut(s) 43, 175, 326, 406
BstKTI GATC 2 cut(s) 277, 479
BstMAI GTCTC 2 cut(s) 328, 410
BstMBI GATC 2 cut(s) 274, 476
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 2 cut(s) 148, 356
BstSCI CCNGG 2 cut(s) 146, 354
BstSLI GKGCMC 2 cut(s) 31, 147
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 4 cut(s) 43, 175, 326, 406
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 24, 73
Cfr10I RCCGGY 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 354
CviAII CATG 4 cut(s) 265, 388, 450, 527
CviJI RGCY 4 cut(s) 9, 50, 89, 282
CviKI_1 RGCY 4 cut(s) 9, 50, 89, 282
DdeI CTNAG 1 cut(s) 217
DpnI GATC 2 cut(s) 276, 478
DpnII GATC 2 cut(s) 274, 476
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 146, 354
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 4 cut(s) 268, 391, 453, 530
FaiI YATR 6 cut(s) 172, 266, 389, 447, 451, 528
FatI CATG 4 cut(s) 264, 387, 449, 526
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 4 cut(s) 50, 162, 333, 413
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 282
HapII CCGG 1 cut(s) 51
Hin1II CATG 4 cut(s) 268, 391, 453, 530
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 75, 199
HpaII CCGG 1 cut(s) 51
HphI GGTGA 6 cut(s) 107, 137, 340, 370, 388, 416
Hpy188I TCNGA 1 cut(s) 509
HpyAV CCTTC 6 cut(s) 221, 319, 401, 448, 464, 511
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 47, 60, 520, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 4 cut(s) 268, 391, 453, 530
Kzo9I GATC 2 cut(s) 274, 476
LpnPI CCDG 6 cut(s) 64, 133, 160, 296, 341, 368
Lsp1109I GCAGC 1 cut(s) 59
MabI ACCWGGT 1 cut(s) 354
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 19, 108, 152
MalI GATC 2 cut(s) 276, 478
MboI GATC 2 cut(s) 274, 476
MboII GAAGA 4 cut(s) 325, 343, 391, 479
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 31, 147
MluCI AATT 4 cut(s) 158, 363, 383, 437
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 5 cut(s) 109, 298, 334, 391, 414
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 1 cut(s) 483
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 148, 356
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 148, 356
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeII GATC 2 cut(s) 274, 476
NlaIII CATG 4 cut(s) 268, 391, 453, 530
NlaIV GGNNCC 3 cut(s) 460, 478, 499
NmuCI GTSAC 2 cut(s) 19, 152
PceI AGGCCT 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 146, 354
PspGI CCWGG 2 cut(s) 146, 354
PspN4I GGNNCC 3 cut(s) 460, 478, 499
PsuI RGATCY 1 cut(s) 476
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 274, 476
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 148, 356
SduI GDGCHC 2 cut(s) 31, 147
SetI ASST 8 cut(s) 11, 91, 110, 120, 232, 330, 360, 475
SexAI ACCWGGT 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 158, 363, 383, 437
SseBI AGGCCT 1 cut(s) 282
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 146, 354
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 73, 273, 351
TasI AATT 4 cut(s) 158, 363, 383, 437
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 24, 73
TseFI GTSAC 2 cut(s) 19, 152
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 19, 152
TspDTI ATGAA 2 cut(s) 376, 493
TspRI CASTG 2 cut(s) 24, 73
XapI RAATTY 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.