Rorug05G0411700

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000228
Physical Location & Seq
Reverse (-)
56865097 .. 56872806
7710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0411700.1

Sequence Viewer

Length: 1053 bp
ATGCTTACATACGAGCAAGACCCGGATGTTGTTCGCTGGGGACTCCAGCTCTTTGAAGGTGATCCGTATTTGAATTGTGGGTATTGTGACTCGGTTAACCAAGATGGCACTAATTATTATGCGGGGCATTATTTTAAGGAAGATGTGGTGTATGATGCGGATTGTATTAATGTGGAATATGATGAACTTATTGCTCATGCTCTTCAAGAAGAGCTGTCACTACTTGATATAGAGGACGAGCCGGGATCTGCGCCTGAGCAAGTAGAGCATTTGCAAGCATCTGTCTTCCCACAAGATTGGTCACAGCAATCTATTGGAAATTATGGCTCTGGACAGGAGAGTGTTCAGGCAGAGGCAGATGAAGTTGGGCCTTCTACTTCGTGTTCTAGCCCAGATGAAAAGTCGTACTATGGAGGAGATGAGTGGTCATATTCCCTAGAGCTGGCTAATGAATATACATTTGATGGAGAGAGGTTGAACCAGATGGTTCCTGTCCCTCATGTTCCTAAAATTAATGGTGATATACCCTCGCTAGATCAAGCAACTTTAGATCACCAAAGGCTTCTGGACAGGTTGCAGTTATATGGGTTGGTTGAAAATAAGGTCCAAGGAGATGGAAACTGTCAGTTCCGCGCTCTAGCTGACCAATTTTATCAATCTCCTGAACACCACGAATTTGTGAGACAACAAATTGTAAATCAGCTCAAGTCATACCCAGAGATATATGAAGGATATGTTCCCATGGCTTATGATGACTATTTGGAGAAGATGTCCAGGAGCGGTGAGTGGGGCGATCATGTTACTTTACAGGCTGCTGCAGATTTGTATGGAGTTAAAATTTTTGTCATAACATCTTTCAAGGACACCTGCTACATTGAGATTCTTCCTAATGCTGAAAGATCGAAACGAGTAATTTGTTTGAGCTTTTGGGCAGAGGTGCACTACAACTCAATTTATTCTGAAGGAGATTTGCCTACATTTGAGACGAAGAAGAAGAAGAAAAGGGGGATGTCACGTAATAAGCACTTGGAGTCCCCAAATAAATACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

350

Amino Acids

40.06

Weight (kDa)

4.47

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 203 - 309 1.2e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 875
Acc36I ACCTGC 1 cut(s) 875
AccBSI CCGCTC 1 cut(s) 780
AccII CGCG 1 cut(s) 633
AciI CCGC 4 cut(s) 122, 158, 631, 780
AclWI GGATC 2 cut(s) 56, 253
AcsI RAATTY 2 cut(s) 674, 837
AcuI CTGAAG 1 cut(s) 981
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 6 cut(s) 56, 73, 206, 478, 596, 859
AjnI CCWGG 1 cut(s) 773
AluBI AGCT 6 cut(s) 49, 214, 442, 641, 703, 924
AluI AGCT 6 cut(s) 49, 214, 442, 641, 703, 924
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 2 cut(s) 676, 977
Alw44I GTGCAC 1 cut(s) 938
AlwI GGATC 2 cut(s) 56, 253
AoxI GGCC 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 938
ApeKI GCWGC 2 cut(s) 812, 815
ApoI RAATTY 2 cut(s) 674, 837
AseI ATTAAT 2 cut(s) 168, 513
AspLEI GCGC 2 cut(s) 253, 635
AspS9I GGNCC 2 cut(s) 368, 604
AsuC2I CCSGG 2 cut(s) 23, 243
AsuHPI GGTGA 4 cut(s) 71, 530, 545, 794
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 942
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 799, 802
BccI CCATC 4 cut(s) 98, 458, 478, 608
BciT130I CCWGG 1 cut(s) 775
BcnI CCSGG 2 cut(s) 23, 243
BcoDI GTCTC 2 cut(s) 676, 977
BfaI CTAG 4 cut(s) 387, 437, 533, 638
BfmI CTRYAG 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 875
BisI GCNGC 2 cut(s) 813, 816
BlsI GCNGC 2 cut(s) 814, 817
Bme1390I CCNGG 3 cut(s) 23, 243, 775
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 368, 604
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 3 cut(s) 23, 243, 775
BmsI GCATC 2 cut(s) 145, 287
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 23, 243
BsaAI YACGTR 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 607, 741
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 775
BseDI CCNNGG 2 cut(s) 607, 741
BseGI GGATG 2 cut(s) 31, 1014
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 942
BseXI GCAGC 2 cut(s) 799, 802
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 942
BsiSI CCGG 2 cut(s) 23, 242
BslFI GGGAC 3 cut(s) 54, 479, 1018
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 676, 977
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 3 cut(s) 54, 479, 1018
BsnI GGCC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 6 cut(s) 61, 245, 535, 550, 793, 899
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 4 cut(s) 122, 158, 631, 780
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 820
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 2 cut(s) 56, 253
BspQI GCTCTTC 2 cut(s) 204, 207
BsrBI CCGCTC 1 cut(s) 780
BssECI CCNNGG 2 cut(s) 607, 741
BssMI GATC 6 cut(s) 61, 245, 535, 550, 793, 899
BssT1I CCWWGG 2 cut(s) 607, 741
Bst2UI CCWGG 1 cut(s) 775
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 204, 207
BstBAI YACGTR 1 cut(s) 1016
BstC8I GCNNGC 2 cut(s) 276, 444
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 31, 1014
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 2 cut(s) 253, 635
BstKTI GATC 6 cut(s) 64, 248, 538, 553, 796, 902
BstMAI GTCTC 2 cut(s) 676, 977
BstMBI GATC 6 cut(s) 61, 245, 535, 550, 793, 899
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 775
BstSCI CCNGG 3 cut(s) 21, 241, 773
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 942
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 2 cut(s) 799, 802
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 2 cut(s) 297, 614
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 31, 1014
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 2 cut(s) 276, 444
CfoI GCGC 2 cut(s) 253, 635
Cfr13I GGNCC 2 cut(s) 368, 604
Csp6I GTAC 1 cut(s) 406
CviAII CATG 4 cut(s) 197, 500, 742, 797
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 255
DpnI GATC 6 cut(s) 63, 247, 537, 552, 795, 901
DpnII GATC 6 cut(s) 61, 245, 535, 550, 793, 899
Eam1104I CTCTTC 2 cut(s) 204, 207
EarI CTCTTC 2 cut(s) 204, 207
Eco130I CCWWGG 2 cut(s) 607, 741
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 981
EcoRII CCWGG 1 cut(s) 773
EcoT14I CCWWGG 2 cut(s) 607, 741
ErhI CCWWGG 2 cut(s) 607, 741
Esp3I CGTCTC 1 cut(s) 977
FaeI CATG 4 cut(s) 200, 503, 745, 800
FaqI GGGAC 3 cut(s) 54, 479, 1018
FatI CATG 4 cut(s) 196, 499, 741, 796
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 813, 816
FokI GGATG 2 cut(s) 38, 1021
Fsp4HI GCNGC 2 cut(s) 813, 816
FspBI CTAG 4 cut(s) 387, 437, 533, 638
GlaI GCGC 2 cut(s) 252, 634
GluI GCNGC 2 cut(s) 813, 816
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 370
HapII CCGG 2 cut(s) 23, 242
HhaI GCGC 2 cut(s) 253, 635
Hin1II CATG 4 cut(s) 200, 503, 745, 800
Hin6I GCGC 2 cut(s) 251, 633
HinP1I GCGC 2 cut(s) 251, 633
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 4 cut(s) 42, 89, 880, 1031
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 23, 242
HphI GGTGA 4 cut(s) 71, 530, 545, 794
Hpy166II GTNNAC 2 cut(s) 97, 940
Hpy188I TCNGA 1 cut(s) 961
Hpy188III TCNNGA 4 cut(s) 206, 330, 566, 662
Hpy8I GTNNAC 2 cut(s) 97, 940
HpyAV CCTTC 4 cut(s) 50, 381, 722, 956
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 4 cut(s) 274, 577, 818, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 4 cut(s) 200, 503, 745, 800
HspAI GCGC 2 cut(s) 251, 633
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 6 cut(s) 61, 245, 535, 550, 793, 899
LguI GCTCTTC 2 cut(s) 204, 207
LmnI GCTCC 1 cut(s) 777
Lsp1109I GCAGC 2 cut(s) 799, 802
LweI GCATC 2 cut(s) 145, 287
MaeI CTAG 4 cut(s) 387, 437, 533, 638
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 5 cut(s) 86, 216, 300, 799, 1011
MalI GATC 6 cut(s) 63, 247, 537, 552, 795, 901
MbiI CCGCTC 1 cut(s) 780
MboI GATC 6 cut(s) 61, 245, 535, 550, 793, 899
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 942
MlyI GAGTC 3 cut(s) 36, 83, 1040
MnlI CCTC 7 cut(s) 226, 346, 407, 465, 507, 538, 928
MseI TTAA 5 cut(s) 96, 135, 168, 513, 834
MspI CCGG 2 cut(s) 23, 242
MspR9I CCNGG 3 cut(s) 23, 243, 775
MvaI CCWGG 1 cut(s) 775
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 2 cut(s) 23, 243
NcoI CCATGG 1 cut(s) 741
NdeII GATC 6 cut(s) 61, 245, 535, 550, 793, 899
NlaIII CATG 4 cut(s) 200, 503, 745, 800
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 4 cut(s) 86, 216, 300, 1011
PaqCI CACCTGC 1 cut(s) 875
PciSI GCTCTTC 2 cut(s) 204, 207
PfeI GAWTC 1 cut(s) 880
PfoI TCCNGGA 1 cut(s) 773
PkrI GCNGC 2 cut(s) 814, 817
PleI GAGTC 3 cut(s) 36, 83, 1039
PpsI GAGTC 3 cut(s) 36, 83, 1039
Ppu21I YACGTR 1 cut(s) 1016
PshBI ATTAAT 2 cut(s) 168, 513
Psp6I CCWGG 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 773
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 368, 604
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SapI GCTCTTC 2 cut(s) 204, 207
SaqAI TTAA 5 cut(s) 96, 135, 168, 513, 834
SatI GCNGC 2 cut(s) 813, 816
Sau3AI GATC 6 cut(s) 61, 245, 535, 550, 793, 899
Sau96I GGNCC 2 cut(s) 368, 604
SchI GAGTC 3 cut(s) 36, 83, 1040
ScrFI CCNGG 3 cut(s) 23, 243, 775
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 2 cut(s) 145, 287
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SsiI CCGC 4 cut(s) 122, 158, 631, 780
SspMI CTAG 4 cut(s) 387, 437, 533, 638
StyD4I CCNGG 3 cut(s) 21, 241, 773
StyI CCWWGG 2 cut(s) 607, 741
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 1 cut(s) 902
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 5 cut(s) 96, 135, 168, 513, 834
Tru9I TTAA 5 cut(s) 96, 135, 168, 513, 834
TseFI GTSAC 4 cut(s) 86, 216, 300, 1011
TseI GCWGC 2 cut(s) 812, 815
Tsp45I GTSAC 4 cut(s) 86, 216, 300, 1011
TspDTI ATGAA 5 cut(s) 198, 375, 411, 465, 741
TspGWI ACGGA 1 cut(s) 54
VneI GTGCAC 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 2 cut(s) 168, 513
XapI RAATTY 2 cut(s) 674, 837
XspI CTAG 4 cut(s) 387, 437, 533, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.