RchiOBHm_Chr5g0071451

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000228
Physical Location & Seq
Forward (+)
77284825 .. 77286012
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34653

Sequence Viewer

Length: 990 bp
ATGGACTTCATCAGTGGACAACTGGCCAGTATCTGTCACGTGGTGGCCATGCCCTATCCAGGTCGGGGTCACATAAACACCATGATGTACCTCTGCAAGTTACTAGCTTCACAAGAAACTGACATTCTCATCACCTTAGTCCTCACGGAAGAGTGTTTAGGCTTCATAGGCTCTGAAGACAAGCTGGACAACATTCGGTTTGCCACAATTCCCAATGTTCTCCCATCAGAGCTGGTCCATGCTGCCGACATGAATGCCTTCATTGAAGCTGCCTTATCCAGAATGGAAATCCCATTTGATCAGCTCTTGGATCAGCTCAAGCCACTGCCTACTTTGATAGTGGCTGACACTTTCCTGCCTTGGGCAGTCAGTGTTGGAAATCGAAGAAATATCCAAGTAGCATCGTTTTGGCCGATGTCCGCATCCATTTTCTCTGTGTTCCAATATTTTCATCTTTTTGCCCAAAATGGGCACTTCCCAGTTGACTTGATAGATGAGGGCAATGAATGTGTGGACTACATCCCAGGAGTTTCTTGTACAAGATTGGCAGACCTTACTAATTTCATCGATGGAAGCAAACCATATATGCTGGGAAACATCATTGAAGATTTTTCTTGGGTCCCCAAAGTACAATATCTCTTGCTTGCTTCTATCTATGAGCTTGAAACTACAGTCATTGACATTTTAAGATTAGAATTTTCACTGCCTGTTTATACAATTGGTCCATTGATACCTCACTTCAAAGCTAATGACCCTCCTAGTAGTGGTCTAGACTATCTAGAATGGCTAAATTCTCAAACTTTTTGCTGTGTCTTGTACATCTCAATGGGAAGCTTTCTTTCAGTCTCTTGTGCCCAAATGGATGAGATTGCAGCCGGTTTGTGCAAGAGCAGTGTTCGATTCTTTTGGGTAGCTCGTGGTGAAACCGGTAGGTTACGAGAGGTTTGTGGTGATAAGGGGTTAGTAGTGCCCTGGTGTGACCAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

329

Amino Acids

36.75

Weight (kDa)

4.56

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 420
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 3 cut(s) 24, 45, 410
AcsI RAATTY 2 cut(s) 695, 790
AcuI CTGAAG 1 cut(s) 195
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 4 cut(s) 89, 538, 630, 818
AfiI CCNNNNNNNGG 5 cut(s) 59, 65, 361, 468, 764
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 4 cut(s) 266, 605, 665, 742
AjnI CCWGG 3 cut(s) 58, 523, 971
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 33
AoxI GGCC 3 cut(s) 24, 45, 410
ApeKI GCWGC 3 cut(s) 242, 269, 872
ApoI RAATTY 2 cut(s) 695, 790
AsiGI ACCGGT 1 cut(s) 926
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 235, 619, 722
AsuHPI GGTGA 3 cut(s) 124, 932, 962
AvaII GGWCC 3 cut(s) 235, 619, 722
BaeGI GKGCMC 3 cut(s) 474, 856, 972
BalI TGGCCA 2 cut(s) 26, 47
BauI CACGAG 1 cut(s) 915
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 229, 256, 884
BccI CCATC 2 cut(s) 232, 563
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 3 cut(s) 60, 525, 973
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 4 cut(s) 104, 759, 770, 779
BfmI CTRYAG 1 cut(s) 669
BisI GCNGC 3 cut(s) 243, 270, 873
BlsI GCNGC 3 cut(s) 244, 271, 874
Bme1390I CCNGG 3 cut(s) 60, 525, 973
Bme18I GGWCC 3 cut(s) 235, 619, 722
BmgT120I GGNCC 3 cut(s) 235, 619, 722
BmiI GGNNCC 2 cut(s) 620, 621
BmrFI CCNGG 3 cut(s) 60, 525, 973
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 410, 431
BmuI ACTGGG 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 567
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 359, 523, 971
BsaWI WCCGGW 1 cut(s) 926
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 65, 361, 468, 764
Bse118I RCCGGY 2 cut(s) 875, 926
Bse1I ACTGG 3 cut(s) 27, 27, 479
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 3 cut(s) 60, 525, 973
BseCI ATCGAT 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 359, 523, 971
BseGI GGATG 3 cut(s) 422, 519, 868
BseLI CCNNNNNNNGG 5 cut(s) 59, 65, 361, 468, 764
BseMI GCAATG 1 cut(s) 508
BseNI ACTGG 3 cut(s) 27, 27, 479
BseSI GKGCMC 3 cut(s) 474, 856, 972
BseXI GCAGC 3 cut(s) 229, 256, 884
BseYI CCCAGC 1 cut(s) 589
BshFI GGCC 3 cut(s) 26, 47, 412
BshTI ACCGGT 1 cut(s) 926
BshVI ATCGAT 1 cut(s) 567
BsiSI CCGG 2 cut(s) 876, 927
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 5 cut(s) 59, 65, 361, 468, 764
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 26, 47, 412
Bsp1286I GDGCHC 3 cut(s) 474, 856, 972
Bsp1407I TGTACA 2 cut(s) 536, 816
Bsp143I GATC 2 cut(s) 298, 310
BspACI CCGC 1 cut(s) 420
BspANI GGCC 3 cut(s) 26, 47, 412
BspDI ATCGAT 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 620, 621
BspPI GGATC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 2 cut(s) 875, 926
BsrGI TGTACA 2 cut(s) 536, 816
BsrI ACTGG 3 cut(s) 27, 27, 479
BssAI RCCGGY 2 cut(s) 875, 926
BssECI CCNNGG 3 cut(s) 359, 523, 971
BssMI GATC 2 cut(s) 298, 310
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 3 cut(s) 60, 525, 973
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 2 cut(s) 536, 816
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 422, 519, 868
BstKTI GATC 2 cut(s) 301, 313
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 2 cut(s) 298, 310
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 3 cut(s) 60, 525, 973
BstSCI CCNGG 3 cut(s) 58, 523, 971
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 3 cut(s) 474, 856, 972
BstV1I GCAGC 3 cut(s) 229, 256, 884
BstV2I GAAGAC 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 567
BsuRI GGCC 3 cut(s) 26, 47, 412
BsuTUI ATCGAT 1 cut(s) 567
BtsCI GGATG 3 cut(s) 422, 519, 868
BtsI GCAGTG 3 cut(s) 323, 701, 898
BtsIMutI CAGTG 5 cut(s) 19, 323, 376, 701, 898
Cac8I GCNNGC 1 cut(s) 645
CaiI CAGNNNCTG 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 875, 926
Cfr13I GGNCC 3 cut(s) 235, 619, 722
ClaI ATCGAT 1 cut(s) 567
Csp6I GTAC 4 cut(s) 88, 537, 629, 817
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 4 cut(s) 49, 82, 239, 250
CviQI GTAC 4 cut(s) 88, 537, 629, 817
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 300, 312
DpnII GATC 2 cut(s) 298, 310
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 3 cut(s) 24, 45, 410
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 359
Eco47I GGWCC 3 cut(s) 235, 619, 722
Eco57I CTGAAG 1 cut(s) 195
Eco72I CACGTG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 3 cut(s) 58, 523, 971
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 4 cut(s) 52, 85, 242, 253
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 48, 81, 238, 249
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 243, 270, 873
FokI GGATG 3 cut(s) 409, 506, 875
Fsp4HI GCNGC 3 cut(s) 243, 270, 873
FspBI CTAG 4 cut(s) 104, 759, 770, 779
GluI GCNGC 3 cut(s) 243, 270, 873
GsaI CCCAGC 1 cut(s) 593
HaeIII GGCC 3 cut(s) 26, 47, 412
HapII CCGG 2 cut(s) 876, 927
Hin1II CATG 4 cut(s) 52, 85, 242, 253
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 1 cut(s) 900
HpaII CCGG 2 cut(s) 876, 927
HphI GGTGA 3 cut(s) 124, 932, 962
Hpy166II GTNNAC 3 cut(s) 17, 484, 514
Hpy188I TCNGA 2 cut(s) 175, 229
Hpy188III TCNNGA 3 cut(s) 279, 770, 779
Hpy8I GTNNAC 3 cut(s) 17, 484, 514
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 96, 872, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 52, 85, 242, 253
KflI GGGWCCC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 298, 310
Lsp1109I GCAGC 3 cut(s) 229, 256, 884
LweI GCATC 2 cut(s) 410, 431
MaeI CTAG 4 cut(s) 104, 759, 770, 779
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 5 cut(s) 35, 68, 99, 933, 977
MalI GATC 2 cut(s) 300, 312
MboI GATC 2 cut(s) 298, 310
MboII GAAGA 4 cut(s) 161, 188, 396, 617
MfeI CAATTG 2 cut(s) 717, 983
MhlI GDGCHC 3 cut(s) 474, 856, 972
MlsI TGGCCA 2 cut(s) 26, 47
MluCI AATT 6 cut(s) 207, 559, 695, 717, 790, 983
MluNI TGGCCA 2 cut(s) 26, 47
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 6 cut(s) 101, 152, 490, 744, 765, 934
Mox20I TGGCCA 2 cut(s) 26, 47
MroXI GAANNNNTTC 1 cut(s) 257
MscI TGGCCA 2 cut(s) 26, 47
MseI TTAA 1 cut(s) 686
MslI CAYNNNNRTG 2 cut(s) 83, 824
Msp20I TGGCCA 2 cut(s) 26, 47
MspI CCGG 2 cut(s) 876, 927
MspR9I CCNGG 3 cut(s) 60, 525, 973
MunI CAATTG 2 cut(s) 717, 983
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 3 cut(s) 60, 525, 973
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 2 cut(s) 298, 310
NlaIII CATG 4 cut(s) 52, 85, 242, 253
NlaIV GGNNCC 2 cut(s) 620, 621
NmuCI GTSAC 3 cut(s) 35, 68, 977
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 900
PinAI ACCGGT 1 cut(s) 926
PkrI GCNGC 3 cut(s) 244, 271, 874
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 3 cut(s) 58, 523, 971
PspCI CACGTG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 3 cut(s) 58, 523, 971
PspN4I GGNNCC 2 cut(s) 620, 621
PspPI GGNCC 3 cut(s) 235, 619, 722
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 33
RsaI GTAC 4 cut(s) 89, 538, 630, 818
RsaNI GTAC 4 cut(s) 88, 537, 629, 817
RseI CAYNNNNRTG 2 cut(s) 83, 824
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 3 cut(s) 243, 270, 873
Sau3AI GATC 2 cut(s) 298, 310
Sau96I GGNCC 3 cut(s) 235, 619, 722
ScrFI CCNGG 3 cut(s) 60, 525, 973
SduI GDGCHC 3 cut(s) 474, 856, 972
SfaNI GCATC 2 cut(s) 410, 431
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 3 cut(s) 235, 619, 722
SmiMI CAYNNNNRTG 2 cut(s) 83, 824
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 6 cut(s) 207, 559, 695, 717, 790, 983
SsiI CCGC 1 cut(s) 420
SspI AATATT 1 cut(s) 446
SspMI CTAG 4 cut(s) 104, 759, 770, 779
StyD4I CCNGG 3 cut(s) 58, 523, 971
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 382, 567, 898
TasI AATT 6 cut(s) 207, 559, 695, 717, 790, 983
TatI WGTACW 3 cut(s) 536, 628, 816
TfiI GAWTC 1 cut(s) 900
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 5 cut(s) 19, 330, 376, 708, 898
TseFI GTSAC 3 cut(s) 35, 68, 977
TseI GCWGC 3 cut(s) 242, 269, 872
Tsp45I GTSAC 3 cut(s) 35, 68, 977
TspDTI ATGAA 6 cut(s) 154, 250, 266, 440, 519, 553
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 5 cut(s) 19, 330, 376, 708, 898
VpaK11BI GGWCC 3 cut(s) 235, 619, 722
XapI RAATTY 2 cut(s) 695, 790
XbaI TCTAGA 2 cut(s) 769, 778
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 4 cut(s) 104, 759, 770, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.