Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

5395420 .. 5395752

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1062100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGGTTGGTGGTGCCATGGTGTAAGCAACTTAAAGTGTTGTGCCATTCTTCTGTGGGTGGGTTTTGGTCACATTGTGGATGGAATTCGACTTTAGAAGCTGTTTTCGCCGGTGTCCCAATGCTTACTTCTCCTCTTTTTCCCGATCAAATTCCAAACAACTGGCAAATAGTTGAAGGATGGAAGATTGGCAAGAGGGTTAAATCAGAGGTACATGATGAAAAGTTGATGACAAGAGAAGAGGTTGCTGAACTTGTGAAGAGATTTATGGATCCTGAAAGCAGTGATGGGACTGAAATGAGGAGAAGAGCGAAAGAGCTCGGAGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

111

Amino Acids

12.51

Weight (kDa)

6.28

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	3 - 94	1.6e-14	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	2 cut(s)	85, 150
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	2 cut(s)	101, 319
AluI	AGCT	2 cut(s)	101, 319
Alw21I	GWGCWC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	266, 279
ApoI	RAATTY	2 cut(s)	85, 150
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	3 cut(s)	75, 174, 281
BmiI	GGNNCC	2 cut(s)	15, 273
BsaJI	CCNNGG	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	86, 185
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	123, 316
BshNI	GGYRCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	101, 304
BsmFI	GGGAC	2 cut(s)	101, 304
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	145, 271
Bsp19I	CCATGG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	15, 273
BspPI	GGATC	2 cut(s)	266, 279
BspQI	GCTCTTC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	145, 271
BssT1I	CCWWGG	1 cut(s)	17
Bst6I	CTCTTC	3 cut(s)	234, 254, 301
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	86, 185
BstKTI	GATC	2 cut(s)	148, 274
BstMBI	GATC	2 cut(s)	145, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	86, 185
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	18, 215
CviJI	RGCY	2 cut(s)	101, 319
CviKI_1	RGCY	2 cut(s)	101, 319
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	2 cut(s)	147, 273
DpnII	GATC	2 cut(s)	145, 271
DraIII	CACNNNGTG	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	234, 254, 301
EarI	CTCTTC	3 cut(s)	234, 254, 301
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	21, 218
FaiI	YATR	3 cut(s)	19, 216, 269
FaqI	GGGAC	2 cut(s)	101, 304
FatI	CATG	2 cut(s)	17, 214
FokI	GGATG	2 cut(s)	93, 192
FriOI	GRGCYC	1 cut(s)	321
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	2 cut(s)	21, 218
HpaII	CCGG	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	208, 323
Hpy188III	TCNNGA	2 cut(s)	143, 275
HpyAV	CCTTC	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	21, 218
Kzo9I	GATC	2 cut(s)	145, 271
LguI	GCTCTTC	1 cut(s)	301
LpnPI	CCDG	3 cut(s)	124, 148, 288
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	2 cut(s)	147, 273
MboI	GATC	2 cut(s)	145, 271
MboII	GAAGA	5 cut(s)	42, 196, 251, 271, 318
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	2 cut(s)	85, 150
MnlI	CCTC	5 cut(s)	144, 189, 202, 235, 294
MseI	TTAA	2 cut(s)	33, 201
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	145, 271
NlaIII	CATG	2 cut(s)	21, 218
NlaIV	GGNNCC	2 cut(s)	15, 273
NmuCI	GTSAC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	15, 273
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	33, 201
Sau3AI	GATC	2 cut(s)	145, 271
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	4 cut(s)	103, 213, 246, 321
SgeI	CNNG	9 cut(s)	30, 123, 155, 175, 205, 227, 246, 266, 287
SgrAI	CRCCGGYG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	85, 150
SstI	GAGCTC	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	85, 150
Tru1I	TTAA	2 cut(s)	33, 201
Tru9I	TTAA	2 cut(s)	33, 201
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	85, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.