Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

3506850 .. 3509027

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCCACAAGAAGAAGCTTGTCAACTAGCCTTCTCACTTCCTTGATCAAGCCTGATAGGACACTTAGTGCTTCTGAATACTCCTTGCTTTCCATCAAAAGAGATGCAAGCCTGGCCTCCACTCGCTGTCGAAGGAAAGTTCGCTTCTCAGGGAAATCTGAAGATCAGATTAGTGTTGAGCCCCAAGTGTTTGACAATCTAAAAGCCAAATTTGCTTCGCCTATCTACCCTTTTGGCCCAAGCATACCTTACTTTGAGCTTTCAAAAAGTCCTCCCACTAATCACAATTACCTCTATAATTGGCTAGATTCTCAACCTAAACACTCAGTCTTGTACATCTCTCTGGGAAGCTTCCTCTCAGTTTCAAAAGCCCAAATGGATGAAATCGTTGCTGGGGTGCAAAACAGTGGTGCTAGGTTCTTGTGGGTGGCTCGTGGGGATGCCTCTAAGTTGAAAGATGGTGTTGATGATAAGGGTTTGGTGGTGTCTTGGTGTGACCAATTGAGGGTGTTGTGCCATGATTCTATTGGTGGGTTTTGGTCACATTGTGGTTGGAATTCAACCCTAGAAGCTGTTTATGCTGGTGTTCCAATTCTCACTTGTCCTGTATTTGGGGATCAAATCCTCAATGCTAAGAAAATTGTGGAAGATTGGAAGATAGGATGCAGGGTACTGAAAAAGAAAAAGAAGGGGTTTGATGAAGAAGATTTGGTGACCAGAGAGGAAATTGTACAACATGTGCAGAGGTTTATGGATCTCGAAAGCAAGGAAGGAAAGGAGATGAGGGAAAGAGCCAAACAACTTCAAGAGACTTGTCAAGGAGCAATTGCCAAAGGTGGCTCATCAGACACAAATCTTGATGCTTTTATTAACGATGTATTTCACAAGACCATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

300

Amino Acids

33.53

Weight (kDa)

8.84

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	624, 762
AcsI	RAATTY	2 cut(s)	209, 556
AcuI	CTGAAG	1 cut(s)	180
AdeI	CACNNNGTG	2 cut(s)	68, 548
AfaI	GTAC	3 cut(s)	335, 672, 732
AfiI	CCNNNNNNNGG	2 cut(s)	505, 611
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	5 cut(s)	264, 366, 454, 561, 806
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	18, 259, 351, 572
AluI	AGCT	4 cut(s)	18, 259, 351, 572
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	624, 762
AoxI	GGCC	2 cut(s)	114, 235
ApoI	RAATTY	2 cut(s)	209, 556
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	724
BanII	GRGCYC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	432
BccI	CCATC	2 cut(s)	101, 452
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	4 cut(s)	27, 305, 414, 566
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	4 cut(s)	94, 430, 653, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 611
BseBI	CCWGG	1 cut(s)	113
BseGI	GGATG	3 cut(s)	385, 445, 668
BseLI	CCNNNNNNNGG	2 cut(s)	505, 611
BseMII	CTCAG	3 cut(s)	162, 339, 372
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	2 cut(s)	116, 237
BslI	CCNNNNNNNGG	2 cut(s)	505, 611
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	116, 237
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	2 cut(s)	333, 730
Bsp143I	GATC	4 cut(s)	45, 163, 616, 754
BspANI	GGCC	2 cut(s)	116, 237
BspCNI	CTCAG	3 cut(s)	161, 338, 371
BspPI	GGATC	2 cut(s)	624, 762
BsrGI	TGTACA	2 cut(s)	333, 730
BssMI	GATC	4 cut(s)	45, 163, 616, 754
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	407
BstAUI	TGTACA	2 cut(s)	333, 730
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	6 cut(s)	65, 148, 325, 358, 447, 633
BstEII	GGTNACC	1 cut(s)	712
BstF5I	GGATG	3 cut(s)	385, 445, 668
BstKTI	GATC	4 cut(s)	48, 166, 619, 757
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	4 cut(s)	45, 163, 616, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 212, 578
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	740
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	116, 237
BtsCI	GGATG	3 cut(s)	385, 445, 668
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	334, 671, 731
CviAII	CATG	2 cut(s)	518, 737
CviQI	GTAC	3 cut(s)	334, 671, 731
DdeI	CTNAG	6 cut(s)	65, 148, 325, 358, 447, 633
DpnI	GATC	4 cut(s)	47, 165, 618, 756
DpnII	GATC	4 cut(s)	45, 163, 616, 754
DraIII	CACNNNGTG	2 cut(s)	68, 548
Eco24I	GRGCYC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	712
EcoO65I	GGTNACC	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	2 cut(s)	521, 740
FaiI	YATR	6 cut(s)	245, 297, 519, 579, 738, 752
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	2 cut(s)	517, 736
FbaI	TGATCA	1 cut(s)	45
FokI	GGATG	3 cut(s)	392, 452, 675
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	4 cut(s)	27, 305, 414, 566
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	116, 237
Hin1II	CATG	2 cut(s)	521, 740
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	2 cut(s)	16, 349
HinfI	GANTC	2 cut(s)	308, 521
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	2 cut(s)	6, 24
Hpy188I	TCNGA	4 cut(s)	76, 160, 168, 847
Hpy188III	TCNNGA	3 cut(s)	758, 806, 857
Hpy8I	GTNNAC	2 cut(s)	6, 24
HpyAV	CCTTC	4 cut(s)	41, 126, 682, 764
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	107, 400, 666, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 212, 578
HpyF3I	CTNAG	6 cut(s)	65, 148, 325, 358, 447, 633
Hsp92II	CATG	2 cut(s)	521, 740
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	45, 163, 616, 754
LmnI	GCTCC	1 cut(s)	821
LweI	GCATC	4 cut(s)	94, 430, 653, 850
MaeI	CTAG	4 cut(s)	27, 305, 414, 566
MaeIII	GTNAC	3 cut(s)	494, 540, 712
MalI	GATC	4 cut(s)	47, 165, 618, 756
MboI	GATC	4 cut(s)	45, 163, 616, 754
MboII	GAAGA	6 cut(s)	24, 173, 659, 667, 713, 716
MfeI	CAATTG	2 cut(s)	500, 825
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	9 cut(s)	209, 286, 298, 500, 556, 591, 639, 726, 825
MmeI	TCCRAC	1 cut(s)	533
MseI	TTAA	2 cut(s)	870, 894
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	2 cut(s)	500, 825
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	113, 212, 578
NdeII	GATC	4 cut(s)	45, 163, 616, 754
NlaIII	CATG	2 cut(s)	521, 740
NmuCI	GTSAC	3 cut(s)	494, 540, 712
NspI	RCATGY	1 cut(s)	740
PciI	ACATGT	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	308, 521
PscI	ACATGT	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	3 cut(s)	335, 672, 732
RsaNI	GTAC	3 cut(s)	334, 671, 731
SaqAI	TTAA	2 cut(s)	870, 894
Sau3AI	GATC	4 cut(s)	45, 163, 616, 754
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	4 cut(s)	94, 430, 653, 850
Sse9I	AATT	9 cut(s)	209, 286, 298, 500, 556, 591, 639, 726, 825
SspMI	CTAG	4 cut(s)	27, 305, 414, 566
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	130, 759
TasI	AATT	9 cut(s)	209, 286, 298, 500, 556, 591, 639, 726, 825
TatI	WGTACW	2 cut(s)	333, 730
TfiI	GAWTC	2 cut(s)	308, 521
Tru1I	TTAA	2 cut(s)	870, 894
Tru9I	TTAA	2 cut(s)	870, 894
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	3 cut(s)	494, 540, 712
Tsp45I	GTSAC	3 cut(s)	494, 540, 712
TspDTI	ATGAA	2 cut(s)	396, 714
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	2 cut(s)	209, 556
XceI	RCATGY	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	4 cut(s)	27, 305, 414, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.