Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Forward (+)

77252817 .. 77253407

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACTAAAATGGAAGACCCCTTTGACCAACTCCTTGACCGGCTCGAGCCGCCGGTGACCACCATCATAGCCGATGTAGAAGTACTCTGGGGAGTTGGGGTTGGTATCAAAAGGAATATTCCGGTGGCTCTGTTTTGGACTATGTCTGCCAAATTTCTTTCAATGCTTCACCGTTTTAATTTTTCAGATTATGGAGACCAGGAATTGGATCAAATAGAAGAGCTTGGAGAAGTCTTTGAAGCAAATGATCCAAAGGTAATGAAGCTTGCTCTGGAATGCATTGAAATGGTTCCAAAAGCACATTACCTTCTATTCACTTCAGTGTATGAGCTTGAACCCAAAATCTTTAACTCTTTGCAAGCTGAATTTGCTTTCCCTGTGTACCCAATTGGTCCTGCGGTCCTGCCATACCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

139

Amino Acids

15.9

Weight (kDa)

4.44

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	2 cut(s)	50, 398
AclWI	GGATC	2 cut(s)	216, 242
AcsI	RAATTY	2 cut(s)	152, 365
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	2 cut(s)	84, 383
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	162, 239, 284, 335
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	4 cut(s)	223, 265, 331, 362
AluI	AGCT	4 cut(s)	223, 265, 331, 362
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	216, 242
Ama87I	CYCGRG	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	152, 365
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	392, 400
AsuHPI	GGTGA	2 cut(s)	67, 161
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	392, 400
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	392, 400
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	392, 400
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	2 cut(s)	39, 52
BseBI	CCWGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	40, 53, 122
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	208, 247
BspACI	CCGC	2 cut(s)	50, 398
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	216, 242
BspQI	GCTCTTC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	189
BsrFI	RCCGGY	2 cut(s)	39, 52
BssAI	RCCGGY	2 cut(s)	39, 52
BssMI	GATC	2 cut(s)	208, 247
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	267, 360
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	211, 250
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	208, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 368
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	267, 360
Cfr10I	RCCGGY	2 cut(s)	39, 52
Cfr13I	GGNCC	2 cut(s)	392, 400
Csp6I	GTAC	2 cut(s)	83, 382
CviJI	RGCY	8 cut(s)	43, 49, 71, 128, 223, 265, 331, 362
CviKI_1	RGCY	8 cut(s)	43, 49, 71, 128, 223, 265, 331, 362
CviQI	GTAC	2 cut(s)	83, 382
DpnI	GATC	2 cut(s)	210, 249
DpnII	GATC	2 cut(s)	208, 247
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	392, 400
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	281
FaiI	YATR	5 cut(s)	68, 143, 192, 327, 409
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
HapII	CCGG	3 cut(s)	40, 53, 122
HindIII	AAGCTT	1 cut(s)	263
HpaII	CCGG	3 cut(s)	40, 53, 122
HphI	GGTGA	2 cut(s)	67, 161
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	279, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 368
Kzo9I	GATC	2 cut(s)	208, 247
LguI	GCTCTTC	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	210, 249
MboI	GATC	2 cut(s)	208, 247
MboII	GAAGA	2 cut(s)	26, 230
MfeI	CAATTG	1 cut(s)	387
MluCI	AATT	5 cut(s)	152, 178, 203, 365, 387
Mph1103I	ATGCAT	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	177, 348
MslI	CAYNNNNRTG	2 cut(s)	284, 320
MspI	CCGG	3 cut(s)	40, 53, 122
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	49, 368
NdeII	GATC	2 cut(s)	208, 247
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	392, 400
PspXI	VCTCGAGB	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	84, 383
RsaNI	GTAC	2 cut(s)	83, 382
RseI	CAYNNNNRTG	2 cut(s)	284, 320
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	177, 348
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	208, 247
Sau96I	GGNCC	2 cut(s)	392, 400
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	7 cut(s)	225, 258, 267, 309, 333, 364, 414
Sfr274I	CTCGAG	1 cut(s)	44
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	2 cut(s)	392, 400
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	284, 320
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	152, 178, 203, 365, 387
SsiI	CCGC	2 cut(s)	50, 398
SspI	AATATT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	45
TasI	AATT	5 cut(s)	152, 178, 203, 365, 387
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	177, 348
Tru9I	TTAA	2 cut(s)	177, 348
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	392, 400
XapI	RAATTY	2 cut(s)	152, 365
XhoI	CTCGAG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.