pycom11g05270

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000228
Physical Location & Seq
Reverse (-)
4053900 .. 4059503
5604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05270.4

Sequence Viewer

Length: 684 bp
ATGGAGGAAATCGCATGTGGCTTGAGAGAGAGTGGGGCCCGGTTCTTTTGGGTGGCACGTGAGGAAGCTTTGGAGTTGCAAGAGAAGTGTGGTGAGATGGGGATTGTGGTGCCTTGGTGTGACCAATTGAGAGTATTGTGTCACTCTTGTATTGGTGGATTTTGGTCTCATTGTGGTTGGAATTCGACCTCGGAAGCTGTTTTTGCCGGCCTTCCAATGTTGACTTTTCCTATATATTGGGACCAAGTGCCCAATAGTAAGATGATTGTGGATGATTGGAAGATAGGGTGGAAGGTGAAGAAGGGTATGGGAGAAGAAGAAATTTTGGTGACTAGAGAGGAAATTAAAGGGATTGTTAAAAGGTTTATGGATTTGGAAAGTGAGGAAGGGAAAAACCTTAGGAGGCAAGCAAGAGAGATTCGGGACATTTGTCGGCAAGCAGTTCAAAAGGGTGGCTCGTCTTATTTCAACATTGAAGCATTTATAAGTGACCTATCAAGATGTGAATATAAAAGAATAAAAGAAAATATTATATCTACAAGTTCAACCATCTCACCAAGTGTTCCTGAAATTGAAGCTCCTCAAATAACTCAAACGAATAAAGGAAAAAGGAATTGCGGATACTTGGAGCTTTCATTTTCAACATATGAGCGAAGGATTTTCACATTTCTTCATGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

6.16

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 618
AcsI RAATTY 2 cut(s) 181, 321
AcvI CACGTG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 560
AgsI TTSAA 6 cut(s) 446, 469, 476, 546, 575, 642
AluBI AGCT 4 cut(s) 68, 197, 578, 631
AluI AGCT 4 cut(s) 68, 197, 578, 631
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 2 cut(s) 36, 208
ApaI GGGCCC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 181, 321
AspS9I GGNCC 3 cut(s) 36, 37, 241
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 4 cut(s) 104, 307, 340, 546
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 398
BaeGI GKGCMC 2 cut(s) 40, 252
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 59
BccI CCATC 2 cut(s) 91, 557
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 614
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 36, 37, 241
BmiI GGNNCC 4 cut(s) 37, 38, 111, 242
BmrFI CCNGG 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 113, 189
Bse118I RCCGGY 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 113, 189
BseGI GGATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 2 cut(s) 40, 252
BshFI GGCC 2 cut(s) 38, 210
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 40, 207
BslFI GGGAC 2 cut(s) 254, 437
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 254, 437
BsnI GGCC 2 cut(s) 38, 210
Bso31I GGTCTC 1 cut(s) 171
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 40, 252
BspACI CCGC 1 cut(s) 618
BspANI GGCC 2 cut(s) 38, 210
BspLI GGNNCC 4 cut(s) 37, 38, 111, 242
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 113, 189
BssT1I CCWWGG 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 208, 408, 438
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 18
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 2 cut(s) 40, 252
Bsu36I CCTNAGG 1 cut(s) 398
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 38, 210
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 3 cut(s) 208, 408, 438
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 36, 37, 241
CviAII CATG 2 cut(s) 15, 674
CviJI RGCY 8 cut(s) 21, 38, 68, 197, 210, 456, 578, 631
CviKI_1 RGCY 8 cut(s) 21, 38, 68, 197, 210, 456, 578, 631
DdeI CTNAG 1 cut(s) 398
DraIII CACNNNGTG 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 18, 677
FaqI GGGAC 2 cut(s) 254, 437
FatI CATG 2 cut(s) 14, 673
FauNDI CATATG 1 cut(s) 646
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 40
FspBI CTAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 38, 210
HapII CCGG 2 cut(s) 40, 207
Hin1II CATG 2 cut(s) 18, 677
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 1 cut(s) 418
HpaII CCGG 2 cut(s) 40, 207
HphI GGTGA 4 cut(s) 104, 307, 340, 546
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 422, 498, 566
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 5 cut(s) 221, 286, 295, 380, 648
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 18, 677
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 583, 628
LpnPI CCDG 3 cut(s) 53, 220, 579
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 4 cut(s) 119, 140, 328, 488
MboII GAAGA 5 cut(s) 292, 310, 326, 329, 662
MfeI CAATTG 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 40, 252
MluCI AATT 6 cut(s) 125, 181, 321, 342, 570, 613
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 6 cut(s) 55, 199, 331, 376, 396, 591
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 3 cut(s) 345, 357, 682
MspI CCGG 2 cut(s) 40, 207
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 203
NaeI GCCGGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 646
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 18, 677
NlaIV GGNNCC 4 cut(s) 37, 38, 111, 242
NmuCI GTSAC 4 cut(s) 119, 140, 328, 488
NspI RCATGY 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 418
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 485
PspCI CACGTG 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 37, 38, 111, 242
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 3 cut(s) 36, 37, 241
SaqAI TTAA 3 cut(s) 345, 357, 682
Sau96I GGNCC 3 cut(s) 36, 37, 241
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 40, 252
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 6 cut(s) 125, 181, 321, 342, 570, 613
SsiI CCGC 1 cut(s) 618
SspI AATATT 1 cut(s) 529
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 113
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 185
TasI AATT 6 cut(s) 125, 181, 321, 342, 570, 613
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 345, 357, 682
Tru9I TTAA 3 cut(s) 345, 357, 682
TseFI GTSAC 4 cut(s) 119, 140, 328, 488
Tsp45I GTSAC 4 cut(s) 119, 140, 328, 488
TspDTI ATGAA 2 cut(s) 624, 662
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 2 cut(s) 181, 321
XceI RCATGY 1 cut(s) 18
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.