Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Forward (+)

77674519 .. 77675122

Gene Structure 604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG486600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCCAGGGAGGAGAGCTCCGACATGGTTGACCCAACCTTTTCCCCCCACGTGGCAGCGATGCCTTTTCCGGGCCGAGGCCACATCAACCCGATGATGAACCTCTGCAAGTTACTCTCTTCCAAAAACCCCCAACTCCTCATCACCTTCGTCGTCACCGAAGAGTGGCTCGGGTTCATCGGCTCCGACCCGAAACCCGACAACATCCGCTTCGCCACAATCCCAAACGTCATCCCCGCCGAGCGCCTCAAAGCTGCCGACTTTCCCGCCTTTTATGAAGCTGTCATGACTAAAATGGAAGACCCCTTTGACCAACTCCTTGACCGGCTCGAGCCGCCGGTGACCACCATCATAGCCGATGTAGAAGTACTCTGGGGAGTTGGGGTTGGTATCAAAAGGAATATTCCGGTGGCTCTGTTTTGGACTATGTCTGCCAAATTTCTTTCAATGCTTCACCGTTTTAATTTTTCAGATTATGGAGACAGGAATTGGATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

166

Amino Acids

18.82

Weight (kDa)

5.34

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	208, 237, 267, 335
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	52, 71, 77, 165
AgsI	TTSAA	1 cut(s)	447
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	18, 254, 281
AluI	AGCT	3 cut(s)	18, 254, 281
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	2 cut(s)	170, 329
AoxI	GGCC	2 cut(s)	73, 79
ApeKI	GCWGC	2 cut(s)	56, 254
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	136, 148, 352, 446
AvaI	CYCGRG	2 cut(s)	170, 329
BanII	GRGCYC	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	68, 241
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	3 cut(s)	57, 255, 335
BlsI	GCNGC	3 cut(s)	58, 256, 336
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	7, 72
BmeT110I	CYCGRG	2 cut(s)	170, 329
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	7, 72
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	6, 76
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 71, 77, 165
Bse118I	RCCGGY	2 cut(s)	324, 337
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	6, 76
BseGI	GGATG	2 cut(s)	204, 231
BseLI	CCNNNNNNNGG	4 cut(s)	52, 71, 77, 165
BseRI	GAGGAG	2 cut(s)	26, 128
BseXI	GCAGC	2 cut(s)	68, 241
BshFI	GGCC	2 cut(s)	75, 81
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	170, 329
BsiSI	CCGG	4 cut(s)	71, 325, 338, 407
BslI	CCNNNNNNNGG	4 cut(s)	52, 71, 77, 165
BsmAI	GTCTC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	75, 81
BsoBI	CYCGRG	2 cut(s)	170, 329
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	492
BspACI	CCGC	4 cut(s)	208, 237, 267, 335
BspANI	GGCC	2 cut(s)	75, 81
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	324, 337
BssAI	RCCGGY	2 cut(s)	324, 337
BssECI	CCNNGG	2 cut(s)	6, 76
BssMI	GATC	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	124, 156
BstBAI	YACGTR	1 cut(s)	52
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	204, 231
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	495
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	7
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	5, 70
BstV1I	GCAGC	2 cut(s)	68, 241
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	75, 81
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	204, 231
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	324, 337
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	25, 286
CviQI	GTAC	1 cut(s)	368
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	124, 156
EarI	CTCTTC	2 cut(s)	124, 156
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	52
Eco88I	CYCGRG	2 cut(s)	170, 329
Eco91I	GGTNACC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	2 cut(s)	28, 289
FaiI	YATR	6 cut(s)	26, 276, 287, 353, 428, 477
FatI	CATG	2 cut(s)	24, 285
FauI	CCCGC	2 cut(s)	244, 274
Fnu4HI	GCNGC	3 cut(s)	57, 255, 335
FokI	GGATG	2 cut(s)	191, 218
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	57, 255, 335
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	57, 255, 335
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	75, 81
HapII	CCGG	4 cut(s)	71, 325, 338, 407
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	28, 289
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HpaII	CCGG	4 cut(s)	71, 325, 338, 407
HphI	GGTGA	4 cut(s)	136, 148, 352, 446
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	22, 187, 472
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	51, 228
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpySE526I	ACGT	2 cut(s)	51, 228
Hsp92II	CATG	2 cut(s)	28, 289
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	2 cut(s)	23, 188
LpnPI	CCDG	7 cut(s)	19, 84, 338, 351, 358, 420, 469
Lsp1109I	GCAGC	2 cut(s)	68, 241
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	2 cut(s)	51, 228
MaeIII	GTNAC	3 cut(s)	111, 154, 340
MalI	GATC	1 cut(s)	494
MboI	GATC	1 cut(s)	492
MboII	GAAGA	3 cut(s)	111, 173, 311
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	437, 463, 487
MmeI	TCCRAC	2 cut(s)	45, 210
MnlI	CCTC	5 cut(s)	4, 71, 113, 149, 257
MseI	TTAA	1 cut(s)	462
MspI	CCGG	4 cut(s)	71, 325, 338, 407
MspR9I	CCNGG	2 cut(s)	7, 72
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	492
NlaIII	CATG	2 cut(s)	28, 289
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	2 cut(s)	101, 265
NmuCI	GTSAC	2 cut(s)	154, 340
PaeR7I	CTCGAG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	58, 256, 336
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	5
PspCI	CACGTG	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	427
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	57, 255, 335
Sau3AI	GATC	1 cut(s)	492
Sau96I	GGNCC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	7, 72
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	20, 41, 54, 105, 149, 231, 256, 283
SfaNI	GCATC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	329
SgrAI	CRCCGGYG	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	437, 463, 487
SsiI	CCGC	4 cut(s)	208, 237, 267, 335
SspI	AATATT	1 cut(s)	403
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	5, 70
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	54, 231
TaqI	TCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	437, 463, 487
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	154, 340
TseI	GCWGC	2 cut(s)	56, 254
Tsp45I	GTSAC	2 cut(s)	154, 340
TspDTI	ATGAA	3 cut(s)	113, 166, 291
Tth111I	GACNNNGTC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.