MD11G1061900.v1.1

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000228
Physical Location & Seq
Reverse (-)
5387081 .. 5388087
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1061900.v1.1.491

Sequence Viewer

Length: 633 bp
ATGAAAGCAACCGAAATATTCTTGCTTAACTCATTTTCCTGGGTACCTAAAGCACAATACCTGCTATTCTCTGCCATCTCCTATGAACTTGAAACCCTAACCATCGACATTTTACGATCAGAATTATCACTACCCATTTACACTATGGGCCCATCAATACCCTACTATGAGCAAAATGACCCTCCTACCCAAGTTGAGCAAGCTCCGTTGCCTTTGGTTGAGCGATTCCCAGGTTCTATCCCTCGTCTCTTCGAGACCCTTGCTTATTTTCCTGCATCCATTTTGTACCTCGCCATGGGAAGTTTCCTTTCAGTTTCTAGCGTCCGACTCCAAATGGACGAGATTGCAGCCGGTTTGTGCAAGAGTGGCGTTCGGTTCATTTGGCCGGTTCGTGGGGAAACCGATAGGGTAAAGGAGGTTTGTGGTGACATGGGGTTGGTAGTGCCTTGGTGTGACCAATTGAGGGTTGGATGGAGGTTTATGGATTTGGAGGATGATGAAGGGAAGGAAATGAGGAGGACAGCCAGAGAACTTAAGCAGTTATGTCATGATGCCATTGCAGAAGGTGGATCATCTCATACCATCATCAAGGCCTTCATTAGTCATTTCGCAGAGGGCGTGCGTGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

4.91

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 1 cut(s) 383
AfaI GTAC 2 cut(s) 45, 287
AfiI CCNNNNNNNGG 3 cut(s) 295, 392, 463
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 2 cut(s) 38, 229
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 248, 251
AlwI GGATC 1 cut(s) 577
AoxI GGCC 3 cut(s) 148, 383, 591
ApaI GGGCCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 148, 149
AsuHPI GGTGA 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 359
BccI CCATC 5 cut(s) 83, 110, 160, 465, 590
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 2 cut(s) 40, 231
BcoDI GTCTC 2 cut(s) 248, 251
BfaI CTAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 40, 231
BmgT120I GGNCC 2 cut(s) 148, 149
BmiI GGNNCC 2 cut(s) 45, 150
BmrFI CCNGG 2 cut(s) 40, 231
BmsI GCATC 2 cut(s) 284, 541
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 39, 229, 294, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 392, 463
Bse118I RCCGGY 2 cut(s) 350, 385
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 40, 231
BseDI CCNNGG 4 cut(s) 39, 229, 294, 446
BseGI GGATG 3 cut(s) 275, 476, 499
BseLI CCNNNNNNNGG 3 cut(s) 295, 392, 463
BseMI GCAATG 1 cut(s) 555
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 359
BshFI GGCC 3 cut(s) 150, 385, 593
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 351, 386
BslI CCNNNNNNNGG 3 cut(s) 295, 392, 463
BsmAI GTCTC 2 cut(s) 248, 251
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 3 cut(s) 150, 385, 593
Bso31I GGTCTC 1 cut(s) 248
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 116, 569
Bsp19I CCATGG 1 cut(s) 294
BspANI GGCC 3 cut(s) 150, 385, 593
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 45, 150
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 350, 385
BssAI RCCGGY 2 cut(s) 350, 385
BssECI CCNNGG 4 cut(s) 39, 229, 294, 446
BssMI GATC 2 cut(s) 116, 569
BssT1I CCWWGG 2 cut(s) 294, 446
Bst2UI CCWGG 2 cut(s) 40, 231
Bst6I CTCTTC 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 201, 620
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 275, 476, 499
BstKTI GATC 2 cut(s) 119, 572
BstMAI GTCTC 2 cut(s) 248, 251
BstMBI GATC 2 cut(s) 116, 569
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 2 cut(s) 40, 231
BstSCI CCNGG 2 cut(s) 38, 229
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 150, 385, 593
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 275, 476, 499
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 201, 620
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 2 cut(s) 350, 385
Cfr13I GGNCC 2 cut(s) 148, 149
CseI GACGC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 44, 286
CviAII CATG 3 cut(s) 295, 430, 548
CviJI RGCY 6 cut(s) 150, 203, 350, 385, 524, 593
CviKI_1 RGCY 6 cut(s) 150, 203, 350, 385, 524, 593
CviQI GTAC 2 cut(s) 44, 286
DpnI GATC 2 cut(s) 118, 571
DpnII GATC 2 cut(s) 116, 569
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 2 cut(s) 294, 446
Eco147I AGGCCT 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 38, 229
EcoT14I CCWWGG 2 cut(s) 294, 446
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 2 cut(s) 294, 446
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 3 cut(s) 298, 433, 551
FaiI YATR 9 cut(s) 84, 146, 168, 296, 431, 482, 544, 549, 579
FatI CATG 3 cut(s) 294, 429, 547
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 3 cut(s) 262, 483, 506
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 3 cut(s) 150, 385, 593
HapII CCGG 2 cut(s) 351, 386
HgaI GACGC 1 cut(s) 310
Hin1II CATG 3 cut(s) 298, 433, 551
HinfI GANTC 2 cut(s) 225, 327
HpaII CCGG 2 cut(s) 351, 386
HphI GGTGA 1 cut(s) 437
Hpy188I TCNGA 2 cut(s) 121, 326
Hpy188III TCNNGA 2 cut(s) 253, 548
HpyAV CCTTC 4 cut(s) 494, 499, 557, 604
HpyCH4V TGCA 4 cut(s) 275, 347, 360, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 298, 433, 551
KpnI GGTACC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 116, 569
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 9 cut(s) 25, 52, 74, 216, 243, 285, 364, 399, 538
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 2 cut(s) 284, 541
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 425, 452
MalI GATC 2 cut(s) 118, 571
MboI GATC 2 cut(s) 116, 569
MboII GAAGA 1 cut(s) 241
MfeI CAATTG 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 122, 458
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 2 cut(s) 349, 448
MseI TTAA 2 cut(s) 27, 534
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 2 cut(s) 351, 386
MspR9I CCNGG 2 cut(s) 40, 231
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 2 cut(s) 40, 231
MwoI GCNNNNNNNGC 1 cut(s) 366
NcoI CCATGG 1 cut(s) 294
NdeII GATC 2 cut(s) 116, 569
NlaIII CATG 3 cut(s) 298, 433, 551
NlaIV GGNNCC 2 cut(s) 45, 150
NmuCI GTSAC 2 cut(s) 425, 452
PagI TCATGA 1 cut(s) 547
PceI AGGCCT 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 38, 229
PspGI CCWGG 2 cut(s) 38, 229
PspN4I GGNNCC 2 cut(s) 45, 150
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 148, 149
RsaI GTAC 2 cut(s) 45, 287
RsaNI GTAC 2 cut(s) 44, 286
SaqAI TTAA 2 cut(s) 27, 534
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 116, 569
Sau96I GGNCC 2 cut(s) 148, 149
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 2 cut(s) 40, 231
SduI GDGCHC 1 cut(s) 152
SetI ASST 8 cut(s) 49, 63, 205, 235, 291, 420, 479, 568
SfaNI GCATC 2 cut(s) 284, 541
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 2 cut(s) 122, 458
SseBI AGGCCT 1 cut(s) 593
SspI AATATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 318
StuI AGGCCT 1 cut(s) 593
StyD4I CCNGG 2 cut(s) 38, 229
StyI CCWWGG 2 cut(s) 294, 446
TaqI TCGA 2 cut(s) 105, 252
TasI AATT 2 cut(s) 122, 458
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 2 cut(s) 27, 534
Tru9I TTAA 2 cut(s) 27, 534
TseFI GTSAC 2 cut(s) 425, 452
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 425, 452
TspDTI ATGAA 5 cut(s) 17, 99, 367, 513, 586
TspGWI ACGGA 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 464
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.