pycom11g05170

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000228
Physical Location & Seq
Reverse (-)
3996590 .. 3997132
543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05170.1

Sequence Viewer

Length: 543 bp
ATGATCTCCAACAGAGACCAGAGATCCCCTCTCTGCCACGTGGTGGCCATGCCCTATCCCGGTCGGGGCCACATCAACCCGATGATGACCCCCTGCAAGCTACTGACTTCACAAAAGATTGACATCCTGATCACCTTCGTCGTCACGGAGGAGTGGTTCAGTTTCATCGGATCCGAAGTCACCCAGGACAACATCCGACTCGCCACGATTCCCAACGTTGTCCCGTCGGAGCTGGTCCGCGCCGCCGACATGTACTGCTTCATCGAAGCGATCATGACCAAGATGGAGGCCCCATTCGAGCGGCTCATGGATCGCCTCGAGCCTCCGCCGTGCCTGATCGTGGCCGACACTTTCCTGCCTTGGGCAGTCCGTGTCGGGAACCGGAGGAGTATTCCGGCGGCGTCGTTTTGGCCGATGCCGGCGTCCTTTTTCTCCGTCTTCCAACATTTTCATCTTTTAGCAGAAAACGGGCACTTCCCGGTTGACTTGTTAGGTTGGTGCCTTTGTCACTATATTTTTTATGAACGTGTCTTTGTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

181

Amino Acids

20.68

Weight (kDa)

6.04

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 1 cut(s) 240
AciI CCGC 5 cut(s) 238, 243, 301, 326, 398
AclI AACGTT 1 cut(s) 216
AclWI GGATC 4 cut(s) 18, 165, 178, 318
AcoI YGGCCR 3 cut(s) 45, 342, 410
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 2 cut(s) 401, 422
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 5 cut(s) 43, 59, 65, 340, 361
AflIII ACRYGT 2 cut(s) 249, 526
AjnI CCWGG 1 cut(s) 183
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 100, 232
AluI AGCT 2 cut(s) 100, 232
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 4 cut(s) 18, 165, 178, 318
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 5 cut(s) 45, 67, 288, 342, 410
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 3 cut(s) 67, 235, 289
AsuC2I CCSGG 2 cut(s) 60, 479
AsuHPI GGTGA 2 cut(s) 124, 172
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 474
BalI TGGCCA 1 cut(s) 47
BamHI GGATCC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 498
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 430
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 185
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 2 cut(s) 60, 479
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 3 cut(s) 243, 302, 399
BlsI GCNGC 3 cut(s) 244, 303, 400
Bme1390I CCNGG 3 cut(s) 60, 185, 479
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 67, 235, 289
BmiI GGNNCC 5 cut(s) 68, 172, 291, 380, 500
BmrFI CCNGG 3 cut(s) 60, 185, 479
BmsI GCATC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpuMI CCSGG 2 cut(s) 60, 479
BsaAI YACGTR 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 401, 422
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 183, 359
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 59, 65, 340, 361
Bse118I RCCGGY 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 183, 359
BseGI GGATG 2 cut(s) 123, 192
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 5 cut(s) 43, 59, 65, 340, 361
BseRI GAGGAG 2 cut(s) 164, 400
BseSI GKGCMC 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 5 cut(s) 47, 69, 290, 344, 412
BshNI GGYRCC 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 5 cut(s) 60, 382, 395, 419, 479
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 5 cut(s) 43, 59, 65, 340, 361
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 5 cut(s) 47, 69, 290, 344, 412
Bso31I GGTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
BspACI CCGC 5 cut(s) 238, 243, 301, 326, 398
BspANI GGCC 5 cut(s) 47, 69, 290, 344, 412
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 68, 172, 291, 380, 500
BspPI GGATC 4 cut(s) 18, 165, 178, 318
BspT107I GGYRCC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 2 cut(s) 183, 359
BssMI GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
BssNI GRCGYC 2 cut(s) 401, 422
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 185
BstACI GRCGYC 2 cut(s) 401, 422
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 98, 420
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 2 cut(s) 123, 192
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 7 cut(s) 6, 26, 132, 173, 273, 313, 339
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
BstMCI CGRYCG 1 cut(s) 64
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 58, 183, 477
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 23, 170
BstYI RGATCY 2 cut(s) 23, 170
BsuRI GGCC 5 cut(s) 47, 69, 290, 344, 412
BtsCI GGATG 2 cut(s) 123, 192
Cac8I GCNNGC 2 cut(s) 98, 420
CciI TCATGA 1 cut(s) 273
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 3 cut(s) 67, 235, 289
CseI GACGC 2 cut(s) 390, 411
Csp6I GTAC 1 cut(s) 253
CviAII CATG 4 cut(s) 49, 250, 274, 307
CviJI RGCY 9 cut(s) 47, 69, 100, 232, 290, 304, 322, 344, 412
CviKI_1 RGCY 9 cut(s) 47, 69, 100, 232, 290, 304, 322, 344, 412
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 540
DpnI GATC 7 cut(s) 5, 25, 131, 172, 272, 312, 338
DpnII GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 3 cut(s) 45, 342, 410
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 235
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 4 cut(s) 52, 253, 277, 310
FaiI YATR 6 cut(s) 50, 251, 275, 308, 513, 522
FaqI GGGAC 1 cut(s) 206
FatI CATG 4 cut(s) 48, 249, 273, 306
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 243, 302, 399
FokI GGATG 2 cut(s) 110, 179
Fsp4HI GCNGC 3 cut(s) 243, 302, 399
GlaI GCGC 1 cut(s) 241
GluI GCNGC 3 cut(s) 243, 302, 399
HaeIII GGCC 5 cut(s) 47, 69, 290, 344, 412
HapII CCGG 5 cut(s) 60, 382, 395, 419, 479
HgaI GACGC 2 cut(s) 390, 411
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 2 cut(s) 401, 422
Hin1II CATG 4 cut(s) 52, 253, 277, 310
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 2 cut(s) 198, 208
HpaII CCGG 5 cut(s) 60, 382, 395, 419, 479
HphI GGTGA 2 cut(s) 124, 172
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 4 cut(s) 170, 175, 197, 229
Hpy188III TCNNGA 3 cut(s) 127, 274, 376
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 3 cut(s) 143, 229, 406
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 39, 216, 526
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 3 cut(s) 39, 216, 526
Hsp92I GRCGYC 2 cut(s) 401, 422
Hsp92II CATG 4 cut(s) 52, 253, 277, 310
HspAI GCGC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
LmnI GCTCC 1 cut(s) 229
LweI GCATC 1 cut(s) 405
MaeII ACGT 3 cut(s) 39, 216, 526
MaeIII GTNAC 4 cut(s) 142, 178, 506, 535
MalI GATC 7 cut(s) 5, 25, 131, 172, 272, 312, 338
MbiI CCGCTC 1 cut(s) 301
MboI GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
MboII GAAGA 1 cut(s) 430
MflI RGATCY 2 cut(s) 23, 170
MhlI GDGCHC 1 cut(s) 474
MlsI TGGCCA 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 4 cut(s) 33, 207, 220, 466
MnlI CCTC 6 cut(s) 39, 142, 280, 326, 333, 378
Mox20I TGGCCA 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 418
MscI TGGCCA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 5 cut(s) 60, 382, 395, 419, 479
MspR9I CCNGG 3 cut(s) 60, 185, 479
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 240
NaeI GCCGGC 1 cut(s) 420
NciI CCSGG 2 cut(s) 60, 479
NdeII GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
NgoMIV GCCGGC 1 cut(s) 418
NlaIII CATG 4 cut(s) 52, 253, 277, 310
NlaIV GGNNCC 5 cut(s) 68, 172, 291, 380, 500
NmuCI GTSAC 4 cut(s) 142, 178, 506, 535
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 317
PagI TCATGA 1 cut(s) 273
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 3 cut(s) 244, 303, 400
PleI GAGTC 1 cut(s) 192
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 40
PscI ACATGT 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 183
PspCI CACGTG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 5 cut(s) 68, 172, 291, 380, 500
PspPI GGNCC 3 cut(s) 67, 235, 289
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 2 cut(s) 23, 170
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 243, 302, 399
Sau3AI GATC 7 cut(s) 3, 23, 129, 170, 270, 310, 336
Sau96I GGNCC 3 cut(s) 67, 235, 289
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 60, 185, 479
SduI GDGCHC 1 cut(s) 474
SetI ASST 7 cut(s) 42, 102, 137, 219, 234, 496, 529
SfaNI GCATC 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SsiI CCGC 5 cut(s) 238, 243, 301, 326, 398
StyD4I CCNGG 3 cut(s) 58, 183, 477
StyI CCWWGG 1 cut(s) 359
TaiI ACGT 3 cut(s) 42, 219, 529
TaqI TCGA 3 cut(s) 264, 297, 318
TatI WGTACW 1 cut(s) 252
TauI GCSGC 3 cut(s) 245, 304, 401
TfiI GAWTC 1 cut(s) 208
TseFI GTSAC 4 cut(s) 142, 178, 506, 535
Tsp45I GTSAC 4 cut(s) 142, 178, 506, 535
TspDTI ATGAA 4 cut(s) 154, 250, 440, 537
TspGWI ACGGA 3 cut(s) 161, 359, 424
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.