Rh5BG487400

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000228
Physical Location & Seq
Forward (+)
77740662 .. 77742079
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG487400.1

Sequence Viewer

Length: 690 bp
ATGGACTTCATCAGTGGACAACCGGCCAGTATCTGTCACGTGGTGGCCATGCCCTATCCAGGTCGGGGTCACATAAACCCCATGATGTACCTCTGCAAGTTACTAGCTTCACAAGAAACTGACATTCTCATCACCTTAGTCCTCACGGAAGAGTGTTTAGGCTTTATAGGCTCTGAAGACAAGCCGGACAACATTCGGTTTGCCACAATTCCCAATGTTCTCCCATCAAAGCTGGTCCATGCTGCCGACACGAATGCCTTCATTGAAGCTGCCTTATCCAGAATGGAAATCCCATTTGACCAGCTCTTGGATCAGCTTAAGCCACTGCCTACTATGATAGTGGCTGACACTTTCCTGCCTTGGGCAGTCAGTGTTGGAAATCGAAGAAATATCCAAGTTGCATCGTTTTGGCCGATGTCCGCATCCATTTTCTCTGTGTTCCAATATTTTCATCTTTTTGCCCAAAATGGGCATTTCCCAGTTGACTTGATAGATGAGGGCAATGAATGTGTGGACTACATCCCAGGAGTTTCTTGTACAAGATTGGTAGACCTTACTAATTTCATGGATGGAAGCAAACCATATATGCTGGGAAACATCATTGAAGATTTTTCTTGGGTCCCCAAAGTACAATATCTCTTGCTTGCTTCTATCTATGAGCTTGAAACTACAGTCATTGACATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

229

Amino Acids

25.62

Weight (kDa)

4.5

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 1 cut(s) 549
AciI CCGC 1 cut(s) 420
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 3 cut(s) 24, 45, 410
AcuI CTGAAG 1 cut(s) 195
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 3 cut(s) 89, 538, 630
AfiI CCNNNNNNNGG 5 cut(s) 59, 65, 307, 361, 468
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 266, 605, 665
AjnI CCWGG 2 cut(s) 58, 523
AluBI AGCT 6 cut(s) 107, 232, 269, 304, 316, 661
AluI AGCT 6 cut(s) 107, 232, 269, 304, 316, 661
AlwI GGATC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 33
AoxI GGCC 3 cut(s) 24, 45, 410
ApeKI GCWGC 2 cut(s) 242, 269
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 235, 619
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 2 cut(s) 235, 619
BalI TGGCCA 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 229, 256
BccI CCATC 2 cut(s) 232, 563
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 60, 525
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 669
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 243, 270
BlsI GCNGC 2 cut(s) 244, 271
Bme1390I CCNGG 2 cut(s) 60, 525
Bme18I GGWCC 2 cut(s) 235, 619
BmgT120I GGNCC 2 cut(s) 235, 619
BmiI GGNNCC 2 cut(s) 620, 621
BmrFI CCNGG 2 cut(s) 60, 525
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 410, 431
BmuI ACTGGG 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 359, 523
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 65, 307, 361, 468
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 27, 479
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 60, 525
BseDI CCNNGG 2 cut(s) 359, 523
BseGI GGATG 3 cut(s) 422, 519, 574
BseLI CCNNNNNNNGG 5 cut(s) 59, 65, 307, 361, 468
BseMI GCAATG 1 cut(s) 508
BseNI ACTGG 2 cut(s) 27, 479
BseXI GCAGC 2 cut(s) 229, 256
BseYI CCCAGC 1 cut(s) 589
BshFI GGCC 3 cut(s) 26, 47, 412
BsiSI CCGG 2 cut(s) 23, 185
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 5 cut(s) 59, 65, 307, 361, 468
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 26, 47, 412
Bsp1407I TGTACA 1 cut(s) 536
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 420
BspANI GGCC 3 cut(s) 26, 47, 412
BspLI GGNNCC 2 cut(s) 620, 621
BspPI GGATC 1 cut(s) 318
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 536
BsrI ACTGG 2 cut(s) 27, 479
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 359, 523
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 60, 525
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 3 cut(s) 422, 519, 574
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 2 cut(s) 60, 525
BstSCI CCNGG 2 cut(s) 58, 523
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 229, 256
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 3 cut(s) 26, 47, 412
BtsCI GGATG 3 cut(s) 422, 519, 574
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 3 cut(s) 19, 323, 376
Cac8I GCNNGC 1 cut(s) 645
CaiI CAGNNNCTG 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 235, 619
Csp6I GTAC 3 cut(s) 88, 537, 629
CviAII CATG 4 cut(s) 49, 82, 239, 565
CviQI GTAC 3 cut(s) 88, 537, 629
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 3 cut(s) 24, 45, 410
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 235, 619
Eco57I CTGAAG 1 cut(s) 195
Eco72I CACGTG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 2 cut(s) 58, 523
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 4 cut(s) 52, 85, 242, 568
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 48, 81, 238, 564
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 2 cut(s) 243, 270
FokI GGATG 3 cut(s) 409, 506, 581
Fsp4HI GCNGC 2 cut(s) 243, 270
FspBI CTAG 1 cut(s) 104
GluI GCNGC 2 cut(s) 243, 270
GsaI CCCAGC 1 cut(s) 593
HaeIII GGCC 3 cut(s) 26, 47, 412
HapII CCGG 2 cut(s) 23, 185
Hin1II CATG 4 cut(s) 52, 85, 242, 568
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HpaII CCGG 2 cut(s) 23, 185
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 4 cut(s) 17, 484, 514, 550
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 4 cut(s) 17, 484, 514, 550
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 96, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 52, 85, 242, 568
KflI GGGWCCC 1 cut(s) 619
Kzo9I GATC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 229, 256
LweI GCATC 2 cut(s) 410, 431
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 35, 68, 99
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 161, 188, 396, 617
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 207, 559
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 3 cut(s) 101, 152, 490
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 318
Msp20I TGGCCA 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 2 cut(s) 23, 185
MspR9I CCNGG 2 cut(s) 60, 525
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 60, 525
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 1 cut(s) 310
NlaIII CATG 4 cut(s) 52, 85, 242, 568
NlaIV GGNNCC 2 cut(s) 620, 621
NmuCI GTSAC 2 cut(s) 35, 68
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 244, 271
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 58, 523
PspCI CACGTG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 2 cut(s) 58, 523
PspN4I GGNNCC 2 cut(s) 620, 621
PspPI GGNCC 2 cut(s) 235, 619
PspPPI RGGWCCY 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 33
RsaI GTAC 3 cut(s) 89, 538, 630
RsaNI GTAC 3 cut(s) 88, 537, 629
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 243, 270
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 2 cut(s) 235, 619
ScrFI CCNGG 2 cut(s) 60, 525
SfaNI GCATC 2 cut(s) 410, 431
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 235, 619
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 207, 559
SsiI CCGC 1 cut(s) 420
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 58, 523
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 382
TasI AATT 2 cut(s) 207, 559
TatI WGTACW 2 cut(s) 536, 628
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 3 cut(s) 19, 330, 376
TseFI GTSAC 2 cut(s) 35, 68
TseI GCWGC 2 cut(s) 242, 269
Tsp45I GTSAC 2 cut(s) 35, 68
TspDTI ATGAA 4 cut(s) 250, 440, 519, 553
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 3 cut(s) 19, 330, 376
Van91I CCANNNNNTGG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 235, 619
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.