Rroxscaffold_1G00009740

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000228
Physical Location & Seq
Reverse (-)
12253270 .. 12254423
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009740.1

Sequence Viewer

Length: 270 bp
ATGATCCGTGAAGATTGGAAAATTGGGTGGAGGGTGAAGAAGGGTTCGGAAAAGGAAGGTTTGGTGAGTAGAGAAGAGATTGGTGGGCTTGTTAAAATGTTTATGGATTTGGAAAATGAGGAAGGGAAAGAAATGAGGAGAAGAGCAAGAGAGCAAAGTGAGATTTATAAATACGCGATCGGAAAAGCAACACCCCGTAATGAAGGGCTTGAGGAGAAGGGTGATCCCTCACATTGTGTTGCGAAGGTGGTGAACCATTGTCTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

89

Amino Acids

10.35

Weight (kDa)

8.6

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccII CGCG 1 cut(s) 176
AclWI GGATC 1 cut(s) 218
AdeI CACNNNGTG 1 cut(s) 236
AlwI GGATC 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 46, 76, 233, 262
BbsI GAAGAC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 230
BseRI GAGGAG 2 cut(s) 151, 227
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 180
BsiEI CGRYCG 1 cut(s) 180
Bsp143I GATC 3 cut(s) 3, 177, 223
BspFNI CGCG 1 cut(s) 176
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 136
BssMI GATC 3 cut(s) 3, 177, 223
Bst6I CTCTTC 2 cut(s) 69, 136
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 3 cut(s) 6, 180, 226
BstMBI GATC 3 cut(s) 3, 177, 223
BstMCI CGRYCG 1 cut(s) 180
BstUI CGCG 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 254
CviJI RGCY 2 cut(s) 88, 208
CviKI_1 RGCY 2 cut(s) 88, 208
DpnI GATC 3 cut(s) 5, 179, 225
DpnII GATC 3 cut(s) 3, 177, 223
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 69, 136
EarI CTCTTC 2 cut(s) 69, 136
FaiI YATR 2 cut(s) 104, 168
HphI GGTGA 4 cut(s) 46, 76, 233, 262
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 49, 182
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 6 cut(s) 34, 50, 116, 197, 211, 238
Kzo9I GATC 3 cut(s) 3, 177, 223
LguI GCTCTTC 1 cut(s) 136
MalI GATC 3 cut(s) 5, 179, 225
MboI GATC 3 cut(s) 3, 177, 223
MboII GAAGA 5 cut(s) 23, 49, 86, 153, 254
MluCI AATT 1 cut(s) 21
MnlI CCTC 5 cut(s) 24, 112, 129, 205, 238
MseI TTAA 1 cut(s) 93
MvnI CGCG 1 cut(s) 176
NdeII GATC 3 cut(s) 3, 177, 223
PciSI GCTCTTC 1 cut(s) 136
Ple19I CGATCG 1 cut(s) 180
PsiI TTATAA 1 cut(s) 168
PvuI CGATCG 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 3 cut(s) 3, 177, 223
SetI ASST 2 cut(s) 61, 249
SgeI CNNG 6 cut(s) 20, 101, 159, 187, 207, 221
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 21
TasI AATT 1 cut(s) 21
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.