Rh5BG487200

UDP-glycosyltransferase 87A1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
77720400 .. 77720858
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG487200.1

Sequence Viewer

Length: 459 bp
ATGGATGAGATCGCAGTTGGTTTGCGAAAAAGTGGTGTTCGATTCTTTTGGGTTGCTCGCACTGAAACGAATTGGTTACAAGAGGTGTGTGGTGATATGGGGTTAGTTGTTCCCTGGTGTGACCAGTTTAGAGTGTTGTGCCATTCTTCTGTTGGTGGGTATTGGTCACATTGTGGATGGAACTCAGTTAGAGAAGGTTTTTTTGGAGGTGTTCCTTTTCTTACCTTTCCCATAACTTTCGATCAAGGTACAAATAGTAAGATGGTTGTGGAGGATTGGAAAATTGGGTGGAGGGTGAAGAGTACTGAGGTGAAAATCGACCACTTGGTGACAAGTGAGGAAATTGCAGTGTTAGTGAAAAATTTTATGGATTTGGAGGATGATGAAGGGAAACAATTGAGAAGGAGAACAAGTCAACTCCAACAGATATGGAAAGGTGCCATTGCAGAAGGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

5.62

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 3 - 95 1.2e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 437
AciI CCGC 1 cut(s) 453
AcsI RAATTY 1 cut(s) 361
AdeI CACNNNGTG 2 cut(s) 173, 328
AfaI GTAC 2 cut(s) 250, 304
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
ApoI RAATTY 1 cut(s) 361
AsuHPI GGTGA 4 cut(s) 104, 307, 322, 340
BanI GGYRCC 1 cut(s) 437
BccI CCATC 2 cut(s) 171, 256
BciT130I CCWGG 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 3 cut(s) 10, 182, 385
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 198, 297
BseNI ACTGG 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 9, 241
BspACI CCGC 1 cut(s) 453
BspCNI CTCAG 2 cut(s) 197, 298
BspLI GGNNCC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 9, 241
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 184, 306
BstF5I GGATG 3 cut(s) 10, 182, 385
BstKTI GATC 2 cut(s) 12, 244
BstMBI GATC 2 cut(s) 9, 241
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BtsCI GGATG 3 cut(s) 10, 182, 385
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 60, 354
Cac8I GCNNGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 249, 303
CviQI GTAC 2 cut(s) 249, 303
DdeI CTNAG 2 cut(s) 184, 306
DpnI GATC 2 cut(s) 11, 243
DpnII GATC 2 cut(s) 9, 241
DraIII CACNNNGTG 2 cut(s) 173, 328
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 113
FaiI YATR 4 cut(s) 98, 233, 368, 430
FokI GGATG 3 cut(s) 17, 189, 392
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HinfI GANTC 1 cut(s) 42
HphI GGTGA 4 cut(s) 104, 307, 322, 340
Hpy166II GTNNAC 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 4 cut(s) 188, 380, 396, 443
HpyCH4V TGCA 2 cut(s) 347, 446
HpyF3I CTNAG 2 cut(s) 184, 306
Kzo9I GATC 2 cut(s) 9, 241
LpnPI CCDG 3 cut(s) 100, 127, 137
MaeIII GTNAC 4 cut(s) 75, 119, 165, 328
MalI GATC 2 cut(s) 11, 243
MboI GATC 2 cut(s) 9, 241
MboII GAAGA 2 cut(s) 138, 310
MfeI CAATTG 1 cut(s) 395
MluCI AATT 5 cut(s) 70, 282, 342, 361, 395
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 7 cut(s) 76, 200, 265, 285, 301, 331, 370
MseI TTAA 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 115
NdeII GATC 2 cut(s) 9, 241
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 3 cut(s) 119, 165, 328
PfeI GAWTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 439
RsaI GTAC 2 cut(s) 250, 304
RsaNI GTAC 2 cut(s) 249, 303
SaqAI TTAA 1 cut(s) 457
Sau3AI GATC 2 cut(s) 9, 241
ScaI AGTACT 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 115
SetI ASST 7 cut(s) 87, 199, 211, 227, 250, 312, 439
SgeI CNNG 9 cut(s) 69, 92, 126, 127, 136, 257, 337, 345, 423
Sse9I AATT 5 cut(s) 70, 282, 342, 361, 395
SsiI CCGC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 113
TaqI TCGA 3 cut(s) 40, 240, 318
TasI AATT 5 cut(s) 70, 282, 342, 361, 395
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TscAI CASTG 2 cut(s) 67, 354
TseFI GTSAC 3 cut(s) 119, 165, 328
Tsp45I GTSAC 3 cut(s) 119, 165, 328
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 2 cut(s) 67, 354
XapI RAATTY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.