Rh5AG468400

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000228
Physical Location & Seq
Forward (+)
80392891 .. 80394312
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG468400.1

Sequence Viewer

Length: 1146 bp
ATGAATAAAACCCCCACCGTCTGCCACGTGGTGGCAGTGCCATATCCCGGCAGAGGCCACGTCAACCCCATGATCAACCTCTGCAAACTACTAGCTTCAAAGAAAGACCACATTCGAATCACCATTGTCGTCACAGAGGAGTGGCTTGGCTTCATAGCCTCTAATCCCAAGCCTCACCAAATCAGCTTCGCTAGCATCCCAAACGTTCTTCCATCTGAGCTAGTTCGCAGTAAAAACTACCCTGAATTTTACGATGCAGTGATGACAAAAATGGAAGCTCCATTTGAAGAGTTAATGGGTCGAATTCAGCCTCCGGTGACGGTGATTATAGCCGACACCGAACTTCTTTGGGCCATTCCCGCCTCCCGCCGGAGGAATATTCCGGTGGCATCGCTCTGGACAGCGTCGGCGTCAGTCTTTGCAACCAAATGTGAAGAGTTGAAGATGGATTTGTTAGACGATGGAGAGCTGAAATTGGACCAAACAGGTGAGCTGGGAGAGCTAGAGGACCCAGGAGTAATCAAGCTCGCTATGGAGTGCATTGCAATGGTTTCGAAAGCGAATTACCTACTATTGAGTTCAGTGTATGAGCTTGAATCCAAAGTTGTAGACACTTTACGAACAGAATGCACTTTCCCTGTGTACCCAATTGGTCCGGCAATACCTTATTTAGAGCTTGAATGTGACAATGGCCTTGACTATCTGAAATGGCTAGATTCCCAACCTAAAGACTCTGTCTTGTACATTTCGTTGGGCAGTTATCTTTCGGTTTCGAGCACCCAAATGGACGAATTTGCTGCTGGGCTTCGAAAGAGTGGGATTCGGTTCTTATGGGTTGCTAGGGCAGAGAGTGCTAGGTTGAAAGAGAGGTCTGGTGATATGGGTTGGCGAATTGTTGAAGAGTGGAAGATTGGCCGCCAGAGGGTTAAGAGAGAGGTAGAAGCTGATCAAGACTTGATGACAAGGGAAGATATTGCTGACATTGTGCAGAGTTTCATGGATCTTGAAAGCAGTGATGGAAAGGAGATGAGAAAAAGAGTGAAGGAACTCAGCGCTTTGTGTCACGGAGCAACTGCAAAAGGTGGTTCATCTGATAAGAACCTTGATGATTTTATCATGGACATAACCAAAGCTGCAGCTATCTGA

Protein Analysis

381

Amino Acids

42.61

Weight (kDa)

5.17

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccI GTMKAC 1 cut(s) 609
AciI CCGC 3 cut(s) 360, 367, 916
AclI AACGTT 1 cut(s) 204
AclWI GGATC 1 cut(s) 1008
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 3 cut(s) 245, 303, 791
AcvI CACGTG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 2 cut(s) 644, 743
AfeI AGCGCT 1 cut(s) 1054
AfiI CCNNNNNNNGG 6 cut(s) 31, 47, 53, 369, 372, 922
AgsI TTSAA 8 cut(s) 99, 287, 442, 596, 680, 862, 899, 1007
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 511
Alw21I GWGCWC 1 cut(s) 779
AlwI GGATC 1 cut(s) 1008
Aor51HI AGCGCT 1 cut(s) 1054
AoxI GGCC 4 cut(s) 55, 351, 691, 913
ApeKI GCWGC 3 cut(s) 797, 1133, 1136
ApoI RAATTY 3 cut(s) 245, 303, 791
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 4 cut(s) 351, 478, 508, 653
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 6 cut(s) 112, 167, 328, 334, 500, 887
AsuII TTCGAA 3 cut(s) 115, 554, 808
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 3 cut(s) 478, 508, 653
BbrPI CACGTG 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 784, 1120
BccI CCATC 4 cut(s) 220, 439, 455, 1010
BcgI CGANNNNNNTGC 6 cut(s) 534, 568, 609, 643, 779, 813
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 2 cut(s) 72, 946
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 7 cut(s) 92, 192, 221, 503, 713, 840, 855
BfmI CTRYAG 1 cut(s) 1134
BfoI RGCGCY 1 cut(s) 1056
BisI GCNGC 4 cut(s) 798, 916, 1134, 1137
BlsI GCNGC 4 cut(s) 799, 917, 1135, 1138
Bme1390I CCNGG 2 cut(s) 48, 513
Bme18I GGWCC 3 cut(s) 478, 508, 653
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 351, 478, 508, 653
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 48, 513
BmsI GCATC 3 cut(s) 204, 244, 398
BmtI GCTAGC 1 cut(s) 195
Bpu14I TTCGAA 3 cut(s) 115, 554, 808
BpuMI CCSGG 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 511
BsaWI WCCGGW 2 cut(s) 313, 382
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 47, 53, 369, 372, 922
Bse3DI GCAATG 2 cut(s) 540, 552
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 6 cut(s) 31, 47, 53, 369, 372, 922
BseMI GCAATG 2 cut(s) 540, 552
BseMII CTCAG 2 cut(s) 207, 1063
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 784, 1120
BseYI CCCAGC 2 cut(s) 493, 800
BsgI GTGCAG 1 cut(s) 1007
BshFI GGCC 4 cut(s) 57, 353, 693, 915
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 5 cut(s) 48, 314, 370, 383, 656
BslI CCNNNNNNNGG 6 cut(s) 31, 47, 53, 369, 372, 922
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 4 cut(s) 57, 353, 693, 915
Bsp119I TTCGAA 3 cut(s) 115, 554, 808
Bsp1286I GDGCHC 1 cut(s) 779
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 3 cut(s) 72, 946, 1000
BspACI CCGC 3 cut(s) 360, 367, 916
BspANI GGCC 4 cut(s) 57, 353, 693, 915
BspCNI CTCAG 2 cut(s) 208, 1062
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 1138
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 1008
BspT104I TTCGAA 3 cut(s) 115, 554, 808
BsrDI GCAATG 2 cut(s) 540, 552
BsrGI TGTACA 1 cut(s) 741
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 3 cut(s) 72, 946, 1000
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 2 cut(s) 19, 322
Bst6I CTCTTC 3 cut(s) 282, 429, 894
BstACI GRCGYC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 851
BstAUI TGTACA 1 cut(s) 741
BstBAI YACGTR 1 cut(s) 28
BstBI TTCGAA 3 cut(s) 115, 554, 808
BstC8I GCNNGC 2 cut(s) 193, 528
BstDEI CTNAG 2 cut(s) 216, 1049
BstF5I GGATG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 3 cut(s) 75, 949, 1003
BstMBI GATC 3 cut(s) 72, 946, 1000
BstMWI GCNNNNNNNGC 4 cut(s) 192, 359, 499, 851
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 46, 511
BstSFI CTRYAG 1 cut(s) 1134
BstV1I GCAGC 2 cut(s) 784, 1120
BstX2I RGATCY 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 1000
BsuRI GGCC 4 cut(s) 57, 353, 693, 915
BtgZI GCGATG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 3 cut(s) 42, 264, 1018
BtsIMutI CAGTG 4 cut(s) 42, 264, 588, 1018
Cac8I GCNNGC 2 cut(s) 193, 528
CfoI GCGC 1 cut(s) 1055
Cfr13I GGNCC 4 cut(s) 351, 478, 508, 653
CseI GACGC 2 cut(s) 393, 399
Csp6I GTAC 2 cut(s) 643, 742
CviAII CATG 3 cut(s) 70, 997, 1117
CviQI GTAC 2 cut(s) 643, 742
DdeI CTNAG 2 cut(s) 216, 1049
DpnI GATC 3 cut(s) 74, 948, 1002
DpnII GATC 3 cut(s) 72, 946, 1000
DraIII CACNNNGTG 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 913
Eam1104I CTCTTC 3 cut(s) 282, 429, 894
EarI CTCTTC 3 cut(s) 282, 429, 894
Eco47I GGWCC 3 cut(s) 478, 508, 653
Eco47III AGCGCT 1 cut(s) 1054
Eco72I CACGTG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 511
FaeI CATG 3 cut(s) 73, 1000, 1120
FatI CATG 3 cut(s) 69, 996, 1116
FauI CCCGC 2 cut(s) 367, 374
FbaI TGATCA 2 cut(s) 72, 946
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 798, 916, 1134, 1137
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 798, 916, 1134, 1137
FspBI CTAG 7 cut(s) 92, 192, 221, 503, 713, 840, 855
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 4 cut(s) 798, 916, 1134, 1137
GsaI CCCAGC 2 cut(s) 497, 804
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 57, 353, 693, 915
HapII CCGG 5 cut(s) 48, 314, 370, 383, 656
HgaI GACGC 2 cut(s) 393, 399
HhaI GCGC 1 cut(s) 1055
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 3 cut(s) 73, 1000, 1120
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 5 cut(s) 117, 596, 716, 731, 820
HpaII CCGG 5 cut(s) 48, 314, 370, 383, 656
HphI GGTGA 6 cut(s) 112, 167, 328, 334, 500, 887
Hpy166II GTNNAC 3 cut(s) 64, 610, 643
Hpy188I TCNGA 4 cut(s) 217, 705, 1093, 1145
Hpy188III TCNNGA 3 cut(s) 397, 950, 1004
Hpy8I GTNNAC 3 cut(s) 64, 610, 643
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 1036
HpyCH4III ACNGT 2 cut(s) 19, 322
HpyCH4IV ACGT 3 cut(s) 27, 60, 204
HpyCH4V TGCA 9 cut(s) 84, 257, 422, 540, 545, 630, 988, 1076, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 359, 499, 851
HpyF3I CTNAG 2 cut(s) 216, 1049
HpySE526I ACGT 3 cut(s) 27, 60, 204
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 3 cut(s) 73, 1000, 1120
HspAI GCGC 1 cut(s) 1053
Ksp22I TGATCA 2 cut(s) 72, 946
Kzo9I GATC 3 cut(s) 72, 946, 1000
LmnI GCTCC 2 cut(s) 283, 1067
Lsp1109I GCAGC 2 cut(s) 784, 1120
LweI GCATC 3 cut(s) 204, 244, 398
MaeI CTAG 7 cut(s) 92, 192, 221, 503, 713, 840, 855
MaeII ACGT 3 cut(s) 27, 60, 204
MaeIII GTNAC 4 cut(s) 130, 316, 683, 1061
MalI GATC 3 cut(s) 74, 948, 1002
MboI GATC 3 cut(s) 72, 946, 1000
MboII GAAGA 7 cut(s) 200, 299, 446, 454, 911, 919, 980
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 1000
MhlI GDGCHC 1 cut(s) 779
MluCI AATT 7 cut(s) 245, 303, 473, 562, 648, 791, 891
MlyI GAGTC 1 cut(s) 725
MseI TTAA 2 cut(s) 293, 927
MslI CAYNNNNRTG 2 cut(s) 545, 782
MspI CCGG 5 cut(s) 48, 314, 370, 383, 656
MspR9I CCNGG 2 cut(s) 48, 513
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 192, 359, 499, 851
NciI CCSGG 1 cut(s) 48
NdeII GATC 3 cut(s) 72, 946, 1000
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 3 cut(s) 73, 1000, 1120
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 4 cut(s) 130, 316, 683, 1061
NspV TTCGAA 3 cut(s) 115, 554, 808
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 4 cut(s) 117, 596, 716, 820
PflFI GACNNNGTC 2 cut(s) 403, 734
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 4 cut(s) 799, 917, 1135, 1138
PleI GAGTC 1 cut(s) 725
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
PpsI GAGTC 1 cut(s) 725
Ppu21I YACGTR 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 511
PspCI CACGTG 1 cut(s) 28
PspFI CCCAGC 2 cut(s) 493, 800
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 4 cut(s) 351, 478, 508, 653
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 1 cut(s) 1138
PsuI RGATCY 1 cut(s) 1000
PsyI GACNNNGTC 2 cut(s) 403, 734
RsaI GTAC 2 cut(s) 644, 743
RsaNI GTAC 2 cut(s) 643, 742
RseI CAYNNNNRTG 2 cut(s) 545, 782
SaqAI TTAA 2 cut(s) 293, 927
SatI GCNGC 4 cut(s) 798, 916, 1134, 1137
Sau3AI GATC 3 cut(s) 72, 946, 1000
Sau96I GGNCC 4 cut(s) 351, 478, 508, 653
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 48, 513
SduI GDGCHC 1 cut(s) 779
SfaNI GCATC 3 cut(s) 204, 244, 398
SfcI CTRYAG 1 cut(s) 1134
SfuI TTCGAA 3 cut(s) 115, 554, 808
SinI GGWCC 3 cut(s) 478, 508, 653
SmiMI CAYNNNNRTG 2 cut(s) 545, 782
Sse9I AATT 7 cut(s) 245, 303, 473, 562, 648, 791, 891
SsiI CCGC 3 cut(s) 360, 367, 916
SspI AATATT 1 cut(s) 379
SspMI CTAG 7 cut(s) 92, 192, 221, 503, 713, 840, 855
StyD4I CCNGG 2 cut(s) 46, 511
TaaI ACNGT 2 cut(s) 19, 322
TaiI ACGT 3 cut(s) 30, 63, 207
TaqI TCGA 5 cut(s) 115, 301, 554, 773, 808
TasI AATT 7 cut(s) 245, 303, 473, 562, 648, 791, 891
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 918
TfiI GAWTC 4 cut(s) 117, 596, 716, 820
Tru1I TTAA 2 cut(s) 293, 927
Tru9I TTAA 2 cut(s) 293, 927
TscAI CASTG 4 cut(s) 42, 264, 588, 1018
TseFI GTSAC 4 cut(s) 130, 316, 683, 1061
TseI GCWGC 3 cut(s) 797, 1133, 1136
Tsp45I GTSAC 4 cut(s) 130, 316, 683, 1061
TspDTI ATGAA 4 cut(s) 17, 142, 985, 1077
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 4 cut(s) 42, 264, 588, 1018
Tth111I GACNNNGTC 2 cut(s) 403, 734
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 3 cut(s) 478, 508, 653
XapI RAATTY 3 cut(s) 245, 303, 791
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 7 cut(s) 92, 192, 221, 503, 713, 840, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.