Rmu_sc0009988.1_g000006

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009988.1
OG0000228
Physical Location & Seq
Reverse (-)
24477 .. 25134
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009988.1_g000006.1.cds

Sequence Viewer

Length: 525 bp
atgccctatccaggtcggggtcacataaaccccatgatgtacctctgcaagttactagcttcacaagaaactgacattctcatcaccttagtcctcacggaagagtgtttaggctttataggctctgaagacaagccggacaacattcggttcgccacaattcccaatgttctcccatcagagctggttcatgctgccgacatgaatgccttcattgaagctgccttatccagaatggaaatcccatttgaccagctcttggatcagctcaagccactgcctactttgatagtggctgacactttcctgccttgggcagtcagtgttggaaatcgaagaaatatccaagtagcatcgttttggccgatgtccgcatccattttctctgtgttccaatattttcatctttttgcccaaaatgggcacttcccagttgacttgataggtaaatgcatctgcatatgcatgggattgcaacgtgtgttgcaatccccgagtcagctgtcagttttatgtggagtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

174

Amino Acids

19.35

Weight (kDa)

5.2

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 5 cut(s) 11, 17, 259, 313, 420
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 6 cut(s) 59, 184, 221, 256, 268, 502
AluI AGCT 6 cut(s) 59, 184, 221, 256, 268, 502
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 194, 221
Asp700I GAANNNNTTC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 181, 208
BccI CCATC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 195, 222
BlsI GCNGC 2 cut(s) 196, 223
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 3 cut(s) 362, 383, 462
BmuI ACTGGG 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 17, 259, 313, 420
Bse1I ACTGG 1 cut(s) 431
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 5 cut(s) 11, 17, 259, 313, 420
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 2 cut(s) 181, 208
BshFI GGCC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 5 cut(s) 11, 17, 259, 313, 420
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 181, 208
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 275, 328
Csp6I GTAC 1 cut(s) 40
CviAII CATG 4 cut(s) 34, 191, 202, 466
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 88
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 2 cut(s) 455, 467
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 4 cut(s) 37, 194, 205, 469
FaiI YATR 9 cut(s) 26, 35, 119, 192, 203, 461, 463, 467, 514
FatI CATG 4 cut(s) 33, 190, 201, 465
FauNDI CATATG 1 cut(s) 461
Fnu4HI GCNGC 2 cut(s) 195, 222
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 2 cut(s) 195, 222
FspBI CTAG 1 cut(s) 56
GluI GCNGC 2 cut(s) 195, 222
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 137
Hin1II CATG 4 cut(s) 37, 194, 205, 469
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 496, 519
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 3 cut(s) 127, 181, 524
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 6 cut(s) 48, 453, 459, 465, 475, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 4 cut(s) 37, 194, 205, 469
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 24, 150, 170, 244, 266, 320, 444
Lsp1109I GCAGC 2 cut(s) 181, 208
LweI GCATC 3 cut(s) 362, 383, 462
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 2 cut(s) 20, 51
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 113, 140, 348
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 2 cut(s) 53, 104
Mph1103I ATGCAT 2 cut(s) 455, 467
MroXI GAANNNNTTC 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 461
NdeII GATC 1 cut(s) 262
NlaIII CATG 4 cut(s) 37, 194, 205, 469
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 2 cut(s) 455, 467
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 2 cut(s) 196, 223
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 464
SatI GCNGC 2 cut(s) 195, 222
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 3 cut(s) 362, 383, 462
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 311
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 159
TscAI CASTG 2 cut(s) 282, 328
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 194, 221
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 179, 202, 218, 392
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 282, 328
Van91I CCANNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 2 cut(s) 455, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.