Rw5G043510

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000228
Physical Location & Seq
Forward (+)
76380486 .. 76381933
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043510.1

Sequence Viewer

Length: 1152 bp
ATGGACTTCATCAGTGGACAACCGGCCAGTATCTGTCACGTGGTGGCCATGCCCTATCCAGGTCGGGGTCACATAAACCCCATGATGTACCTCTGCAAGTTACTAGCTTCACAAGAAACTGACATTCTCATCACCTTAGTCCTCACGGAAGAGTGTTTAGGCTTTATAGGCTCTGAAGACAAGCCGGACAACATTCGGTTTGCCACAATTCCCAATGTTCTCCCATCAAAGCTGCCACTGCCTACTATGATAGTGGCTGACACTTTCCTGCCTTGGGCAGTCAGTGTTGGAAATCGAAGAAATATCCAAGTAGCATCGTTTTGGCCGATGTCCGCATCCATTTTCTCTGTGTTCCAATATTTTCATCTTTTTGCCCAAAATGGGCATTTCCCAGTTGACTTGATAGATGAGGGCAATGAATGTGTGGACTACATCCCAGGAGTTTCTTGTACAAGATTGGTAGACCTTACTAATTTCATGGATGGAAGCAAACCATATATGCTGGGAAACATCATTGAAGATTTTTCTTGGGTCCCCAAAGTACAATATCTCTTGCTTGCTTCTATCTATGATAGTGGTCTAGACTATCTAGAATGGCTAGATTCTCAAACTTTTAGCTCTGTCTTGTGCATCTCAATGGGAAGCTTTCTTTCAGTGACTTGTGCCCAAATGGATGAGATTGCAGCCGGTTTGTGCAAGAGCAGTGTTCGATTCTTTTGGGTAGCTCGTGGTGAAATCGGTAGGTTACAAGAGGTTTGTGGTGATAAGGGGTTAGTAGTGCCCTGGTGTGACCAATTGCGAGTGTTATGTCATCCTTGTATTGGGGTTAGCGAAGGTGTTTTCTCTAGTGTTCCTTTTCTTACTTTCCCCATGATTTTCGATCAAGGCCTGAACAGTAAGATGGTTGTGGAGGATTGGAAGATTGGATGGAAGGTGAAGAGACTTGAGGCGAAAATCGACCAGGTGAAAATTGCAGGGTTGGTGAAGAAATTCATGGATTTGGAGGATGGTGAAGGGAAAGAGACGAGGAGTAGAGTAAGAGAATTACAGCATACATGGAAGGGTGCCATTGAAGAAGGTGGATCCTTTAAAACCAACTTCGGTGCCTTCATCAGAGATTTCTTGCAATGCCATGCACATCAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

383

Amino Acids

42.89

Weight (kDa)

5.24

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 205 - 307 5.2e-06 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1064, 1103
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 333
AclWI GGATC 2 cut(s) 1077, 1090
AcoI YGGCCR 3 cut(s) 24, 45, 323
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 1 cut(s) 195
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 3 cut(s) 89, 451, 543
AfiI CCNNNNNNNGG 5 cut(s) 59, 65, 274, 381, 821
AgsI TTSAA 2 cut(s) 518, 1073
AjnI CCWGG 4 cut(s) 58, 436, 782, 960
AluBI AGCT 5 cut(s) 107, 232, 618, 645, 725
AluI AGCT 5 cut(s) 107, 232, 618, 645, 725
Alw26I GTCTC 2 cut(s) 934, 1016
AlwI GGATC 2 cut(s) 1077, 1090
AlwNI CAGNNNCTG 1 cut(s) 33
AoxI GGCC 4 cut(s) 24, 45, 323, 886
ApeKI GCWGC 2 cut(s) 232, 683
ApoI RAATTY 1 cut(s) 989
Asp700I GAANNNNTTC 1 cut(s) 989
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 7 cut(s) 124, 743, 773, 946, 976, 994, 1022
AvaII GGWCC 1 cut(s) 532
BaeGI GKGCMC 2 cut(s) 667, 783
BalI TGGCCA 1 cut(s) 47
BamHI GGATCC 1 cut(s) 1082
BanI GGYRCC 2 cut(s) 1064, 1103
BauI CACGAG 1 cut(s) 726
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 219, 695
BccI CCATC 5 cut(s) 232, 476, 895, 921, 1001
BciT130I CCWGG 4 cut(s) 60, 438, 784, 962
BcoDI GTCTC 2 cut(s) 934, 1016
BfaI CTAG 5 cut(s) 104, 581, 590, 599, 846
BisI GCNGC 2 cut(s) 233, 684
BlsI GCNGC 2 cut(s) 234, 685
Bme1390I CCNGG 4 cut(s) 60, 438, 784, 962
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 5 cut(s) 533, 534, 1066, 1084, 1105
BmrFI CCNGG 4 cut(s) 60, 438, 784, 962
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 3 cut(s) 323, 344, 639
BmuI ACTGGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 965
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 272, 436, 782
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 65, 274, 381, 821
Bse118I RCCGGY 2 cut(s) 22, 686
Bse1I ACTGG 2 cut(s) 27, 392
Bse3DI GCAATG 2 cut(s) 421, 1133
BseBI CCWGG 4 cut(s) 60, 438, 784, 962
BseDI CCNNGG 3 cut(s) 272, 436, 782
BseGI GGATG 7 cut(s) 335, 432, 487, 679, 811, 932, 1012
BseLI CCNNNNNNNGG 5 cut(s) 59, 65, 274, 381, 821
BseMI GCAATG 2 cut(s) 421, 1133
BseNI ACTGG 2 cut(s) 27, 392
BseRI GAGGAG 1 cut(s) 1042
BseSI GKGCMC 2 cut(s) 667, 783
BseXI GCAGC 2 cut(s) 219, 695
BseYI CCCAGC 1 cut(s) 502
BshFI GGCC 4 cut(s) 26, 47, 325, 888
BshNI GGYRCC 2 cut(s) 1064, 1103
BsiSI CCGG 3 cut(s) 23, 185, 687
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 5 cut(s) 59, 65, 274, 381, 821
BsmAI GTCTC 2 cut(s) 934, 1016
BsmBI CGTCTC 1 cut(s) 1016
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 4 cut(s) 26, 47, 325, 888
Bsp1286I GDGCHC 2 cut(s) 667, 783
Bsp1407I TGTACA 1 cut(s) 449
Bsp143I GATC 2 cut(s) 880, 1082
BspACI CCGC 1 cut(s) 333
BspANI GGCC 4 cut(s) 26, 47, 325, 888
BspLI GGNNCC 5 cut(s) 533, 534, 1066, 1084, 1105
BspPI GGATC 2 cut(s) 1077, 1090
BspT107I GGYRCC 2 cut(s) 1064, 1103
BsrDI GCAATG 2 cut(s) 421, 1133
BsrFI RCCGGY 2 cut(s) 22, 686
BsrGI TGTACA 1 cut(s) 449
BsrI ACTGG 2 cut(s) 27, 392
BssAI RCCGGY 2 cut(s) 22, 686
BssECI CCNNGG 3 cut(s) 272, 436, 782
BssMI GATC 2 cut(s) 880, 1082
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 4 cut(s) 60, 438, 784, 962
Bst4CI ACNGT 1 cut(s) 896
Bst6I CTCTTC 2 cut(s) 144, 932
BstAUI TGTACA 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 7 cut(s) 335, 432, 487, 679, 811, 932, 1012
BstKTI GATC 2 cut(s) 883, 1085
BstMAI GTCTC 2 cut(s) 934, 1016
BstMBI GATC 2 cut(s) 880, 1082
BstMWI GCNNNNNNNGC 3 cut(s) 168, 238, 1142
BstNI CCWGG 4 cut(s) 60, 438, 784, 962
BstSCI CCNGG 4 cut(s) 58, 436, 782, 960
BstSLI GKGCMC 2 cut(s) 667, 783
BstV1I GCAGC 2 cut(s) 219, 695
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
BsuRI GGCC 4 cut(s) 26, 47, 325, 888
BtsCI GGATG 7 cut(s) 335, 432, 487, 679, 811, 932, 1012
BtsI GCAGTG 2 cut(s) 236, 709
BtsIMutI CAGTG 5 cut(s) 19, 236, 289, 660, 709
Cac8I GCNNGC 1 cut(s) 558
CaiI CAGNNNCTG 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 22, 686
Cfr13I GGNCC 1 cut(s) 532
CsiI ACCWGGT 1 cut(s) 960
Csp6I GTAC 3 cut(s) 88, 450, 542
CviAII CATG 7 cut(s) 49, 82, 478, 871, 994, 1056, 1133
CviQI GTAC 3 cut(s) 88, 450, 542
DdeI CTNAG 1 cut(s) 136
DpnI GATC 2 cut(s) 882, 1084
DpnII GATC 2 cut(s) 880, 1082
DraI TTTAAA 1 cut(s) 1090
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 3 cut(s) 24, 45, 323
Eam1104I CTCTTC 2 cut(s) 144, 932
EarI CTCTTC 2 cut(s) 144, 932
Eco130I CCWWGG 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 195
Eco72I CACGTG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 4 cut(s) 58, 436, 782, 960
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 1016
FaeI CATG 7 cut(s) 52, 85, 481, 874, 997, 1059, 1136
FaqI GGGAC 1 cut(s) 518
FatI CATG 7 cut(s) 48, 81, 477, 870, 993, 1055, 1132
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 233, 684
FokI GGATG 7 cut(s) 322, 419, 494, 686, 798, 939, 1019
Fsp4HI GCNGC 2 cut(s) 233, 684
FspBI CTAG 5 cut(s) 104, 581, 590, 599, 846
GluI GCNGC 2 cut(s) 233, 684
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 4 cut(s) 26, 47, 325, 888
HapII CCGG 3 cut(s) 23, 185, 687
Hin1II CATG 7 cut(s) 52, 85, 481, 874, 997, 1059, 1136
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 2 cut(s) 602, 711
HpaII CCGG 3 cut(s) 23, 185, 687
HphI GGTGA 7 cut(s) 124, 743, 773, 946, 976, 994, 1022
Hpy166II GTNNAC 4 cut(s) 17, 397, 427, 463
Hpy188I TCNGA 2 cut(s) 175, 1115
Hpy188III TCNNGA 2 cut(s) 581, 590
Hpy8I GTNNAC 4 cut(s) 17, 397, 427, 463
HpyAV CCTTC 6 cut(s) 827, 925, 1007, 1054, 1070, 1117
HpyCH4III ACNGT 1 cut(s) 896
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 7 cut(s) 96, 630, 683, 696, 974, 1126, 1136
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 238, 1142
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 7 cut(s) 52, 85, 481, 874, 997, 1059, 1136
KflI GGGWCCC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 880, 1082
Lsp1109I GCAGC 2 cut(s) 219, 695
LweI GCATC 3 cut(s) 323, 344, 639
MabI ACCWGGT 1 cut(s) 960
MaeI CTAG 5 cut(s) 104, 581, 590, 599, 846
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 6 cut(s) 35, 68, 99, 655, 744, 788
MalI GATC 2 cut(s) 882, 1084
MboI GATC 2 cut(s) 880, 1082
MboII GAAGA 8 cut(s) 161, 188, 309, 530, 931, 949, 997, 1085
MfeI CAATTG 1 cut(s) 794
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 2 cut(s) 667, 783
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 6 cut(s) 207, 472, 794, 969, 989, 1043
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 8 cut(s) 101, 152, 403, 745, 904, 940, 997, 1020
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 989
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 1089
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 3 cut(s) 23, 185, 687
MspR9I CCNGG 4 cut(s) 60, 438, 784, 962
MunI CAATTG 1 cut(s) 794
MvaI CCWGG 4 cut(s) 60, 438, 784, 962
MwoI GCNNNNNNNGC 3 cut(s) 168, 238, 1142
NdeII GATC 2 cut(s) 880, 1082
NlaIII CATG 7 cut(s) 52, 85, 481, 874, 997, 1059, 1136
NlaIV GGNNCC 5 cut(s) 533, 534, 1066, 1084, 1105
NmuCI GTSAC 4 cut(s) 35, 68, 655, 788
PceI AGGCCT 1 cut(s) 888
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 2 cut(s) 602, 711
PkrI GCNGC 2 cut(s) 234, 685
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 4 cut(s) 58, 436, 782, 960
PspCI CACGTG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 4 cut(s) 58, 436, 782, 960
PspN4I GGNNCC 5 cut(s) 533, 534, 1066, 1084, 1105
PspPI GGNCC 1 cut(s) 532
PspPPI RGGWCCY 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 33
PsuI RGATCY 1 cut(s) 1082
RsaI GTAC 3 cut(s) 89, 451, 543
RsaNI GTAC 3 cut(s) 88, 450, 542
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 1 cut(s) 1089
SatI GCNGC 2 cut(s) 233, 684
Sau3AI GATC 2 cut(s) 880, 1082
Sau96I GGNCC 1 cut(s) 532
ScrFI CCNGG 4 cut(s) 60, 438, 784, 962
SduI GDGCHC 2 cut(s) 667, 783
SexAI ACCWGGT 1 cut(s) 960
SfaNI GCATC 3 cut(s) 323, 344, 639
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
Sse9I AATT 6 cut(s) 207, 472, 794, 969, 989, 1043
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 1 cut(s) 333
SspI AATATT 1 cut(s) 359
SspMI CTAG 5 cut(s) 104, 581, 590, 599, 846
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 4 cut(s) 58, 436, 782, 960
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 896
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 295, 709, 879, 957
TasI AATT 6 cut(s) 207, 472, 794, 969, 989, 1043
TatI WGTACW 2 cut(s) 449, 541
TfiI GAWTC 2 cut(s) 602, 711
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TscAI CASTG 5 cut(s) 19, 243, 289, 660, 709
TseFI GTSAC 4 cut(s) 35, 68, 655, 788
TseI GCWGC 2 cut(s) 232, 683
Tsp45I GTSAC 4 cut(s) 35, 68, 655, 788
TspDTI ATGAA 5 cut(s) 353, 432, 466, 982, 1099
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 5 cut(s) 19, 243, 289, 660, 709
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 989
XbaI TCTAGA 2 cut(s) 580, 589
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 5 cut(s) 104, 581, 590, 599, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.