Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Forward (+)

77253409 .. 77253995

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATGAAATTGCTGCCGGGTTGCGAGATAGTGGGATTCGGTTCATTTGGGTTGCGAGGGGAGAGAGTTCTAGGTTGAAAGAGAGCTGTGGTGATATGGGGTTGGTTGTGCCATGGTGTGAGCAATTGAAGGTTTTGTCTCATTCTTCTGTTGGGGGGTTTTGGACTCATTGTGGGTGGAACTCAACTCTTGAAGCTGTTTTTGGTGGTGTTCCAATGCTTACTTTCCCTCTGTTCTTGGATCAAGTGCCCAACAGTAGGCAAATTGTTGAAGACTGGAGGATTGGAAAGAGGGTTAGAGAGGTACAAGGCGATGAGAGTTTGATGACAAGGGACAAAGTTGCCGAGCTGGTGCAGAGATTTATGGATCTTGAAAGCGGCGATGGAAAGGAAATGAGGAAGAAAGCGAAAGAACTCGGGGATTTGTGTCACCAAGCAATTGCAGAAGGTGGTTCATCTGATAAGAACCTTGATGGTTTGATCAGGGATATAACCAAAGCTGCAGCCATCAAGAGGACTGATGTTCCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

177

Amino Acids

19.65

Weight (kDa)

5.68

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	3 - 96	3.1e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	249, 375
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	258, 513
AgsI	TTSAA	5 cut(s)	79, 130, 194, 272, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	4 cut(s)	87, 197, 349, 500
AluI	AGCT	4 cut(s)	87, 197, 349, 500
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	249, 375
Ama87I	CYCGRG	1 cut(s)	416
ApeKI	GCWGC	3 cut(s)	14, 500, 503
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	104, 422
AvaI	CYCGRG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	487, 515
BccI	CCATC	3 cut(s)	377, 467, 515
BclI	TGATCA	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	4 cut(s)	15, 379, 501, 504
BlsI	GCNGC	4 cut(s)	16, 380, 502, 505
Bme1390I	CCNGG	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	416
BmrFI	CCNGG	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 513
Bse1I	ACTGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	258, 513
BseNI	ACTGG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	487, 515
BsgI	GTGCAG	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	258, 513
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	241, 367, 480
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	249, 375
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	241, 367, 480
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	244, 370, 483
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	241, 367, 480
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	487, 515
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	2 cut(s)	327, 396
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	5 cut(s)	87, 197, 349, 500, 506
CviKI_1	RGCY	5 cut(s)	87, 197, 349, 500, 506
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	3 cut(s)	243, 369, 482
DpnII	GATC	3 cut(s)	241, 367, 480
Eco130I	CCWWGG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	117
FaiI	YATR	4 cut(s)	98, 115, 365, 491
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	15, 379, 501, 504
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	15, 379, 501, 504
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	15, 379, 501, 504
GsuI	CTGGAG	1 cut(s)	298
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	117
HinfI	GANTC	2 cut(s)	37, 166
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	104, 422
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	3 cut(s)	191, 371, 511
HpyAV	CCTTC	2 cut(s)	124, 440
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	355, 443, 503
Hsp92II	CATG	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	241, 367, 480
LpnPI	CCDG	4 cut(s)	31, 262, 335, 469
Lsp1109I	GCAGC	2 cut(s)	487, 515
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	243, 369, 482
MboI	GATC	3 cut(s)	241, 367, 480
MboII	GAAGA	3 cut(s)	138, 284, 412
MfeI	CAATTG	2 cut(s)	125, 438
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	9, 125, 264, 438
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	51, 240, 273, 285, 295, 390, 507
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	2 cut(s)	125, 438
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	241, 367, 480
NlaIII	CATG	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	16, 380, 502, 505
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SatI	GCNGC	4 cut(s)	15, 379, 501, 504
Sau3AI	GATC	3 cut(s)	241, 367, 480
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	9 cut(s)	77, 89, 135, 199, 306, 351, 451, 471, 502
SfcI	CTRYAG	1 cut(s)	501
Sse9I	AATT	4 cut(s)	9, 125, 264, 438
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	257
TasI	AATT	4 cut(s)	9, 125, 264, 438
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	14, 500, 503
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	21, 34, 444
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.