Rh5DG498600

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000228
Physical Location & Seq
Forward (+)
78221453 .. 78221749
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG498600.1

Sequence Viewer

Length: 297 bp
ATGGACTTCATCAGTGGACAACCGGCCAGTATCTGTCGCGTGGTGGCCATGCCCTATCCAGGTCGGGGTCACATAAACCCCATGATGTACCTCTGCAAGTTACTAGCTTCACAAGAAACTGACATTCTCATCACCTTAGTCCTCACGGAAGAGAAAGGCTTTATAGGCTCTGAAGACAAGCCGGACAACATTCGGTTTGTCACAATTCCCAATGTTCTCCCATCAGAGCTGGTCCGTGCTGCCGACATGAATGCCTTCATTGAAGCTGCCTTAACCAGAATGGAAATCCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

4.78

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AcoI YGGCCR 2 cut(s) 24, 45
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 59, 65
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 107, 229, 266
AluI AGCT 3 cut(s) 107, 229, 266
AlwNI CAGNNNCTG 1 cut(s) 33
AoxI GGCC 2 cut(s) 24, 45
ApeKI GCWGC 2 cut(s) 239, 266
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 226, 253
BccI CCATC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 104
BisI GCNGC 2 cut(s) 240, 267
BlsI GCNGC 2 cut(s) 241, 268
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 65
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 59, 65
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 226, 253
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 26, 47
BsiSI CCGG 2 cut(s) 23, 182
BslI CCNNNNNNNGG 2 cut(s) 59, 65
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 26, 47
BspANI GGCC 2 cut(s) 26, 47
BspFNI CGCG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 136
BstFNI CGCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 226, 253
BstV2I GAAGAC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 26, 47
BtsIMutI CAGTG 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 88
CviAII CATG 3 cut(s) 49, 82, 247
CviJI RGCY 8 cut(s) 26, 47, 107, 159, 168, 181, 229, 266
CviKI_1 RGCY 8 cut(s) 26, 47, 107, 159, 168, 181, 229, 266
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 24, 45
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 52, 85, 250
FaiI YATR 5 cut(s) 50, 74, 83, 164, 248
FatI CATG 3 cut(s) 48, 81, 246
Fnu4HI GCNGC 2 cut(s) 240, 267
Fsp4HI GCNGC 2 cut(s) 240, 267
FspBI CTAG 1 cut(s) 104
GluI GCNGC 2 cut(s) 240, 267
HaeIII GGCC 2 cut(s) 26, 47
HapII CCGG 2 cut(s) 23, 182
Hin1II CATG 3 cut(s) 52, 85, 250
HpaII CCGG 2 cut(s) 23, 182
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 172, 226
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 52, 85, 250
LpnPI CCDG 7 cut(s) 36, 40, 45, 72, 195, 215, 289
Lsp1109I GCAGC 2 cut(s) 226, 253
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 3 cut(s) 68, 99, 199
MboII GAAGA 2 cut(s) 161, 185
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 47
MnlI CCTC 2 cut(s) 101, 152
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 2 cut(s) 23, 182
MspR9I CCNGG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 165
NlaIII CATG 3 cut(s) 52, 85, 250
NmuCI GTSAC 2 cut(s) 68, 199
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 241, 268
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 240, 267
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 60
SetI ASST 6 cut(s) 64, 93, 109, 137, 231, 268
SinI GGWCC 1 cut(s) 232
Sse9I AATT 1 cut(s) 204
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 58
TasI AATT 1 cut(s) 204
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 68, 199
TseI GCWGC 2 cut(s) 239, 266
Tsp45I GTSAC 2 cut(s) 68, 199
TspDTI ATGAA 2 cut(s) 247, 263
TspGWI ACGGA 2 cut(s) 161, 224
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.