Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256977.1

Orthogroup ID

OG0000228

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 513

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

atggagtgcattgcaatggtttcgaaagcgaattacctactattgagttcagtgtatgagcttgaatccaaagttgtagacactttacgaacagaatgcactttccctgtgtacccaattggtccggcaataccttatttagagcttgaatgtgacaatggccttgactatctgaaatggctagattcccaacctaaagactctgtcttgtacctttcgttggggagttatctttgggtttcgagcacccaaatggacgaatttgctgctgggcttcgaaagagtgggattcggttcttatgggttgctaggggagagagtgctaggttgaaagagaggtgtggtgatgtggggttagtggtgccatggtgtgaccaattgaaagtgttatgtcatacatctgttggtggtttttggactcattgtgggtggaactcgactctagaagctgtgtttgctggtgttccaatgcttacttcccctttggcttttgatcaatttcctaacagttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

4.85

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca	FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica	MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica	Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis	pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis	RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata	RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora	Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii	Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa	Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha	Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana	Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	113, 212
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	4 cut(s)	65, 149, 331, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	3 cut(s)	61, 145, 449
AluI	AGCT	3 cut(s)	61, 145, 449
Alw21I	GWGCWC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	2 cut(s)	23, 277
AvaII	GGWCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	5 cut(s)	37, 78, 112, 248, 282
BclI	TGATCA	1 cut(s)	493
BfaI	CTAG	4 cut(s)	182, 309, 324, 443
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	363
Bpu14I	TTCGAA	2 cut(s)	23, 277
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	9, 21
BseDI	CCNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	2 cut(s)	9, 21
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	162
Bsp119I	TTCGAA	2 cut(s)	23, 277
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	493
Bsp19I	CCATGG	1 cut(s)	365
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	363
BspT104I	TTCGAA	2 cut(s)	23, 277
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	9, 21
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	493
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	509
BstBI	TTCGAA	2 cut(s)	23, 277
BstDSI	CCRYGG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	496
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	112, 211
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	7 cut(s)	61, 145, 162, 181, 274, 449, 488
CviKI_1	RGCY	7 cut(s)	61, 145, 162, 181, 274, 449, 488
CviQI	GTAC	2 cut(s)	112, 211
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	369
FaiI	YATR	5 cut(s)	57, 301, 367, 391, 396
FatI	CATG	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	4 cut(s)	182, 309, 324, 443
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	369
HinfI	GANTC	6 cut(s)	65, 185, 200, 289, 418, 439
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	79, 112
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	79, 112
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	9, 14, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
Hsp92II	CATG	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	493
LpnPI	CCDG	4 cut(s)	120, 138, 255, 444
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	182, 309, 324, 443
MaeIII	GTNAC	2 cut(s)	152, 371
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MfeI	CAATTG	2 cut(s)	117, 377
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	5 cut(s)	31, 117, 260, 377, 497
MlyI	GAGTC	3 cut(s)	194, 412, 433
MnlI	CCTC	1 cut(s)	330
MslI	CAYNNNNRTG	2 cut(s)	14, 251
MspI	CCGG	1 cut(s)	125
MunI	CAATTG	2 cut(s)	117, 377
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	152, 371
NspV	TTCGAA	2 cut(s)	23, 277
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	65, 185, 289
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	3 cut(s)	194, 412, 433
PpsI	GAGTC	3 cut(s)	194, 412, 433
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	2 cut(s)	113, 212
RsaNI	GTAC	2 cut(s)	112, 211
RseI	CAYNNNNRTG	2 cut(s)	14, 251
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	194, 412, 433
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	9 cut(s)	39, 63, 136, 147, 196, 216, 329, 341, 451
SfuI	TTCGAA	2 cut(s)	23, 277
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	14, 251
Sse9I	AATT	5 cut(s)	31, 117, 260, 377, 497
SspMI	CTAG	4 cut(s)	182, 309, 324, 443
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	4 cut(s)	23, 242, 277, 437
TasI	AATT	5 cut(s)	31, 117, 260, 377, 497
TfiI	GAWTC	3 cut(s)	65, 185, 289
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	152, 371
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	152, 371
TspRI	CASTG	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	4 cut(s)	182, 309, 324, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.