Rmu_sc0009988.1_g000005

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009988.1
OG0000228
Physical Location & Seq
Reverse (-)
18670 .. 19221
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009988.1_g000005.1.cds

Sequence Viewer

Length: 552 bp
atgggaagctttctttcagtctcttgtgcccaaatggatgagattgcagccggtttgtgcaagagcagtgttcgattcttttgggtagctcatggtgaaatcggtaggttacgagaggtttgtggtgataaggggttagtagtgccctggtgtgaccaattgcgagtgttatgtcatccttgtattgggggggggggggttttgactccttgtgggtggaactcagttagtgaaggtgttttctctggtgttccttttcttactttccccatgattttcgatcatggcctgaacagtaagatggttgtggaggattggaagattggatggaaggtgaagagacctgaggcgaaaatcgaccaggcgaaaattgcagggttggtgaagaaattcatggatttggaggatggtgaagggaaagagacgaggagtagagtaagagaattacagcatacatgggagggtgccattgaagaaggtgcatcctttaaaaccaacttcggtgccttcatcagagatttcttgcaatgccatgcacatcaagcaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

183

Amino Acids

20.26

Weight (kDa)

6.59

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 464, 503
AcsI RAATTY 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 473
AjnI CCWGG 2 cut(s) 146, 360
AluBI AGCT 2 cut(s) 9, 89
AluI AGCT 2 cut(s) 9, 89
Alw26I GTCTC 3 cut(s) 25, 334, 416
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 389
AsuHPI GGTGA 5 cut(s) 107, 137, 346, 394, 422
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 2 cut(s) 31, 147
BanI GGYRCC 2 cut(s) 464, 503
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 295, 321, 401
BciT130I CCWGG 2 cut(s) 148, 362
BcoDI GTCTC 3 cut(s) 25, 334, 416
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 148, 362
BmiI GGNNCC 2 cut(s) 466, 505
BmrFI CCNGG 2 cut(s) 148, 362
BmsI GCATC 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 50
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 2 cut(s) 148, 362
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 5 cut(s) 43, 175, 332, 412, 482
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 237, 336
BseRI GAGGAG 1 cut(s) 442
BseSI GKGCMC 2 cut(s) 31, 147
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 288
BshNI GGYRCC 2 cut(s) 464, 503
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 25, 334, 416
BsmBI CGTCTC 1 cut(s) 416
BsnI GGCC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 31, 147
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 2 cut(s) 236, 337
BspLI GGNNCC 2 cut(s) 466, 505
BspT107I GGYRCC 2 cut(s) 464, 503
BspTNI GGTCTC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 148, 362
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 223, 345
BstF5I GGATG 5 cut(s) 43, 175, 332, 412, 482
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 25, 334, 416
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 371, 542
BstNI CCWGG 2 cut(s) 148, 362
BstSCI CCNGG 2 cut(s) 146, 360
BstSLI GKGCMC 2 cut(s) 31, 147
BstV1I GCAGC 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 5 cut(s) 43, 175, 332, 412, 482
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 50
CviAII CATG 6 cut(s) 92, 271, 284, 394, 456, 533
CviJI RGCY 4 cut(s) 9, 50, 89, 288
CviKI_1 RGCY 4 cut(s) 9, 50, 89, 288
DdeI CTNAG 2 cut(s) 223, 345
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 146, 360
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 6 cut(s) 95, 274, 287, 397, 459, 536
FaiI YATR 8 cut(s) 93, 172, 272, 285, 395, 453, 457, 534
FatI CATG 6 cut(s) 91, 270, 283, 393, 455, 532
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 5 cut(s) 50, 162, 339, 419, 469
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 51
Hin1II CATG 6 cut(s) 95, 274, 287, 397, 459, 536
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 2 cut(s) 75, 205
HpaII CCGG 1 cut(s) 51
HphI GGTGA 5 cut(s) 107, 137, 346, 394, 422
Hpy188I TCNGA 1 cut(s) 515
HpyAV CCTTC 5 cut(s) 227, 325, 407, 470, 517
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 6 cut(s) 47, 60, 374, 482, 526, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 542
HpyF3I CTNAG 2 cut(s) 223, 345
Hsp92II CATG 6 cut(s) 95, 274, 287, 397, 459, 536
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 9 cut(s) 64, 133, 160, 231, 302, 347, 357, 360, 374
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 108, 152
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 331, 349, 397, 485
MfeI CAATTG 1 cut(s) 158
MhlI GDGCHC 2 cut(s) 31, 147
MluCI AATT 4 cut(s) 158, 369, 389, 443
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 6 cut(s) 109, 304, 340, 397, 420, 454
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 1 cut(s) 489
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 148, 362
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 148, 362
MwoI GCNNNNNNNGC 2 cut(s) 371, 542
NdeII GATC 1 cut(s) 280
NlaIII CATG 6 cut(s) 95, 274, 287, 397, 459, 536
NlaIV GGNNCC 2 cut(s) 466, 505
NmuCI GTSAC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 146, 360
PspGI CCWGG 2 cut(s) 146, 360
PspN4I GGNNCC 2 cut(s) 466, 505
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 280
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 148, 362
SduI GDGCHC 2 cut(s) 31, 147
SetI ASST 8 cut(s) 11, 91, 110, 120, 238, 336, 346, 481
SfaNI GCATC 1 cut(s) 491
Sse9I AATT 4 cut(s) 158, 369, 389, 443
StyD4I CCNGG 2 cut(s) 146, 360
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 3 cut(s) 73, 279, 357
TasI AATT 4 cut(s) 158, 369, 389, 443
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 382, 499
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.