Rh5DG497700

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000228
Physical Location & Seq
Forward (+)
78136881 .. 78137507
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG497700.1

Sequence Viewer

Length: 627 bp
ATGGAAGCCCATTCAAGGCCCACTGAGGATCACTATTTTGATTGCCTTGACAAGCAACCTAGAGGGTCAGTCTTGTATGTGTCACAGGGAAGTCTGCATTCAGCTCCCCAAGCTCAAATGGATGAAATCGCCGCCGGGTTGAAGGCCAGTCGTGTTCGGTTCTTTTGGGTGGCGCGTGAGGAAGTGTCGAAGCTGAAAGAGAAATGTGGTGACATGGGGATTGTGGTGCCTTGGTGTGACCAATTGACAGTGTTGTGCCATTCTTCTTTGGGTGGGTTTTGGTCACATTGTGGCTGGAATTCGACCTCTGAGACTGTTTTTGCCGGTCTTCCGATGTTGACTTTTCCTATATATTGGGACCAAGTATCTAATAGTAAGATGATCGTTGAAGATTGGAAAATTGGGTGGAGGGTGAAGAAGGGTTCGGGAGAAGAAGGTTTGGTCATGAGTAGAGAAGAGATTGGTGGGCTTGTTAAAAACTTTATGGATTTGGAAAATGAGGAGGGGAAAGAAATGAGGAGAAGAGCAAGAGAGCTTAGTGAAATTTACAAACGAGCAGTCAGAAAAGGTGGGTCATCTTATAACAGTGTTGAAGCCTTTATCAGTGACATATCAAAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

208

Amino Acids

23.59

Weight (kDa)

6.53

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 23 - 133 2.8e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 226
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 298, 543
AdeI CACNNNGTG 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 15, 142, 389, 593
AluBI AGCT 4 cut(s) 104, 113, 193, 535
AluI AGCT 4 cut(s) 104, 113, 193, 535
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 36
AoxI GGCC 2 cut(s) 17, 144
ApoI RAATTY 2 cut(s) 298, 543
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 18, 358
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 221, 424
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 320
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 18, 358
BmiI GGNNCC 2 cut(s) 228, 359
BmrFI CCNGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 15, 300
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 515, 532
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 19, 146
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 135, 324
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 19, 146
Bsp143I GATC 2 cut(s) 28, 381
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 19, 146
BspCNI CTCAG 2 cut(s) 16, 301
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 228, 359
BspPI GGATC 1 cut(s) 36
BspQI GCTCTTC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 2 cut(s) 28, 381
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 250, 316, 587
Bst6I CTCTTC 2 cut(s) 450, 517
BstDEI CTNAG 3 cut(s) 24, 309, 536
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 31, 384
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 28, 381
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 134
BstUI CGCG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 19, 146
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 4 cut(s) 21, 255, 592, 610
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 18, 358
CviAII CATG 2 cut(s) 214, 445
DdeI CTNAG 3 cut(s) 24, 309, 536
DpnI GATC 2 cut(s) 30, 383
DpnII GATC 2 cut(s) 28, 381
DraIII CACNNNGTG 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 450, 517
EarI CTCTTC 2 cut(s) 450, 517
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 217, 448
FaiI YATR 8 cut(s) 78, 215, 350, 352, 446, 485, 582, 611
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 213, 444
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 19, 146
HapII CCGG 2 cut(s) 135, 324
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 217, 448
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HpaII CCGG 2 cut(s) 135, 324
HphI GGTGA 2 cut(s) 221, 424
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 310, 333, 563
Hpy188III TCNNGA 2 cut(s) 426, 445
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 3 cut(s) 136, 412, 428
HpyCH4III ACNGT 3 cut(s) 250, 316, 587
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 24, 309, 536
Hsp92II CATG 2 cut(s) 217, 448
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 28, 381
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 71, 148, 160, 280, 337
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 5 cut(s) 81, 209, 236, 282, 605
MalI GATC 2 cut(s) 30, 383
MboI GATC 2 cut(s) 28, 381
MboII GAAGA 7 cut(s) 255, 320, 401, 427, 443, 467, 534
MfeI CAATTG 1 cut(s) 242
MluCI AATT 4 cut(s) 242, 298, 399, 543
MnlI CCTC 8 cut(s) 19, 56, 172, 316, 402, 493, 496, 510
MseI TTAA 1 cut(s) 474
MspI CCGG 2 cut(s) 135, 324
MspR9I CCNGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 97
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 28, 381
NlaIII CATG 2 cut(s) 217, 448
NlaIV GGNNCC 2 cut(s) 228, 359
NmuCI GTSAC 5 cut(s) 81, 209, 236, 282, 605
PagI TCATGA 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 517
PctI GAATGC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 228, 359
PspPI GGNCC 2 cut(s) 18, 358
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 28, 381
Sau96I GGNCC 2 cut(s) 18, 358
ScrFI CCNGG 1 cut(s) 136
SetI ASST 8 cut(s) 61, 106, 115, 195, 308, 439, 537, 571
SinI GGWCC 1 cut(s) 358
Sse9I AATT 4 cut(s) 242, 298, 399, 543
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 250, 316, 587
TaqI TCGA 2 cut(s) 188, 302
TasI AATT 4 cut(s) 242, 298, 399, 543
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 4 cut(s) 28, 255, 592, 610
TseFI GTSAC 5 cut(s) 81, 209, 236, 282, 605
Tsp45I GTSAC 5 cut(s) 81, 209, 236, 282, 605
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 4 cut(s) 28, 255, 592, 610
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 2 cut(s) 298, 543
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.