RchiOBHm_Chr5g0071461

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000228
Physical Location & Seq
Forward (+)
77288582 .. 77289795
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34654

Sequence Viewer

Length: 321 bp
ATGACTCTACTTACAATTTTTGTTTCGGTTTTGTTTGTTTGGATTTGTGAGTTGTGCCTGAACAGTAAGATGGTTGTGGAGGATTGGAAGATTGGATGGAAGGTGAAGAGACCTGAGGCGAAAATCGACCAGGCGAAAATTGCAGGGTTGGTGAAGAAATTCATGGATTTGGAGGATGGTGAAGGGAAAGAGACGAGGAGTAGAGTAAGAGAATTACAGCATACATGGAAGGGTGCCATTGAAGAAGGTGGATCCTTTAAATCCAACTTCAGTGCCTTCATCAGAGATTTCTTGCAATGCCATGCACATCAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

106

Amino Acids

12.22

Weight (kDa)

8.49

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AclWI GGATC 2 cut(s) 246, 259
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 103, 185
AlwI GGATC 2 cut(s) 246, 259
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 115, 163, 191
AxyI CCTNAGG 1 cut(s) 114
BamHI GGATCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 233
BccI CCATC 3 cut(s) 64, 90, 170
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 103, 185
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 235, 253
BmrFI CCNGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 101, 181
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 103, 185
BsmBI CGTCTC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 235, 253
BspPI GGATC 2 cut(s) 246, 259
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 302
BssMI GATC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 101, 181
BstKTI GATC 1 cut(s) 254
BstMAI GTCTC 2 cut(s) 103, 185
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 140, 311
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
Bsu36I CCTNAGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 101, 181
BtsIMutI CAGTG 1 cut(s) 277
CviAII CATG 3 cut(s) 163, 225, 302
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 166, 228, 305
FaiI YATR 4 cut(s) 164, 222, 226, 303
FatI CATG 3 cut(s) 162, 224, 301
FokI GGATG 2 cut(s) 108, 188
Hin1II CATG 3 cut(s) 166, 228, 305
HinfI GANTC 1 cut(s) 4
HphI GGTGA 3 cut(s) 115, 163, 191
Hpy188I TCNGA 1 cut(s) 284
HpyAV CCTTC 5 cut(s) 94, 176, 223, 239, 286
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 143, 295, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 311
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 3 cut(s) 166, 228, 305
Kzo9I GATC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 71, 116, 126, 129, 143
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 4 cut(s) 100, 118, 166, 254
MflI RGATCY 1 cut(s) 251
MluCI AATT 4 cut(s) 15, 138, 158, 212
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 73, 109, 166, 189
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 140, 311
NdeII GATC 1 cut(s) 251
NlaIII CATG 3 cut(s) 166, 228, 305
NlaIV GGNNCC 2 cut(s) 235, 253
PdmI GAANNNNTTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 235, 253
PsuI RGATCY 1 cut(s) 251
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 105, 115, 250
Sse9I AATT 4 cut(s) 15, 138, 158, 212
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 126
TasI AATT 4 cut(s) 15, 138, 158, 212
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 151, 268
TspRI CASTG 1 cut(s) 277
XapI RAATTY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.