pycom11g05140

UDP-glycosyltransferase 87A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000228
Physical Location & Seq
Reverse (-)
3983744 .. 3984643
900 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05140.1

Sequence Viewer

Length: 900 bp
ATGCTATCCTGTGTGTTTATAGAGAGGGGCAATGAACGTGTGGATTACATCCCAGGAGTTTCTTCGACACGACTGGCAGACCTGCCTCATTTCATTAGTGGAATCTCCCCAAACATTCTCCACCACATCCATGAAGATTTCTCATGGGTGCCTAAAGCACAATATCTCTTATTCCCCTCCATCTATGAGCTTGAACCCCAAGTCATCGACGTTTTAAGATCAATATTCTCACCACCCATTTACACAATTGGTCCATTAATACCCTACATCAAATCTAATTATCACCCGAGTGCTGGCATCGACTATCTACAATGGCTAGATTCTCAACCTTGCAGCTCTGTTCTGTACATCTCCATGGGAAGTTTTCTTTCATTTTCAGGTGCCCAAATGGATGAGATTGCAGGCGGTTTGCGCTTGAGTAGGGTTCGGTTCATATGGGTGGCCCGTGGGGAAACGGACAGGTTAAAAGATGCTTGTGGCGACATGGGTTTGGTAGTGCCCTGGTGTGAACAATTGAGGGTTTTGTCCCATTCTAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAACTCAGTTAGGGAAGGTGTTTTTGCTGGTGTCCCGTTTCTGACCTTTCCATTACGTATCGATCAAGGCATGGTTAGTAAGATGATTGTGGAGGATTGGAAAGTTGGGTGGAGGTTGAGGAAGGCTGAGGACAAAATGGACCATTTGGTAACAAGCGAGGAGATTGCTGGGCTGGCGCAGAAGTTCATGGAGTTGGAGGACGATGAAGGGAGAGAAATGAGAAGAAGGGCCAGAAAACTTAAACAGATATGTCATGGTGCTATTGAAGAAGGCGGGTCATCTCAAACGAACATCAATGCCTTCGTTGGAGACATTTTTCAAGGCCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

300

Amino Acids

33.68

Weight (kDa)

5.81

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 107 - 222 1.3e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30140 AT2G30140 AT2G30150 AT2G30150
fragaria_vesca FvH4_3g39560 FvH4_3g39570 FvH4_3g39580 FvH4_3g39590 FvH4_3g39591 FvH4_3g39620 FvH4_3g39630 FvH4_3g39630 FvH4_3g39631
malus_domestica MD03G1059700.v1.1 MD11G1061800.v1.1 MD11G1061900.v1.1 MD11G1062000.v1.1 MD11G1062100.v1.1 MD11G1062200.v1.1 MD11G1062300.v1.1 MD11G1062400.v1.1 MD11G1062500.v1.1 MD11G1062600.v1.1 MD11G1062700.v1.1 MD11G1062800.v1.1
prunus_persica Prupe.6G049300_v2.0.a1 Prupe.6G049400_v2.0.a1 Prupe.6G049600_v2.0.a1 Prupe.6G049700_v2.0.a1 Prupe.6G049900_v2.0.a1 Prupe.6G050000_v2.0.a1 Prupe.6G050100_v2.0.a1 Prupe.6G050200_v2.0.a1
pyrus_communis pycom03g04800 pycom11g05140 pycom11g05170 pycom11g05180 pycom11g05190 pycom11g05220 pycom11g05230 pycom11g05240 pycom11g05260 pycom11g05270
rosa_chinensis RchiOBHm_Chr5g0071331 RchiOBHm_Chr5g0071341 RchiOBHm_Chr5g0071371 RchiOBHm_Chr5g0071381 RchiOBHm_Chr5g0071431 RchiOBHm_Chr5g0071441 RchiOBHm_Chr5g0071451 RchiOBHm_Chr5g0071461 RchiOBHm_Chr5g0071471
rosa_laevigata RLG00000036203 RLG00000036204 RLG00000036207 RLG00000036208 RLG00000036209 RLG00000036210 RLG00000036213 RLG00000036214 RLG00000036215 RLG00000036217
rosa_multiflora Rmu_co8256977.1_g000001 Rmu_co8352537.1_g000001 Rmu_sc0001567.1_g000004 Rmu_sc0004697.1_g000003 Rmu_sc0006990.1_g000003 Rmu_sc0006990.1_g000004 Rmu_sc0009988.1_g000004 Rmu_sc0009988.1_g000005 Rmu_sc0009988.1_g000006 Rmu_sc0009988.1_g000008 Rmu_sc0009988.1_g000009 Rmu_sc0009988.1_g000014 Rmu_sc0009988.1_g000020 Rmu_sc0009988.1_g000021
rosa_roxburghii Rroxscaffold_1G00009650 Rroxscaffold_1G00009670 Rroxscaffold_1G00009680 Rroxscaffold_1G00009740 Rroxscaffold_1G00009760 Rroxscaffold_1G00009780 Rroxscaffold_1G00009800 Rroxscaffold_7G00203790
rosa_rugosa Rorug05G0411400 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411500 Rorug05G0411700 Rorug05G0411700 Rorug05G0411900 Rorug05G0412000 Rorug05G0412200 Rorug05G0412300 Rorug05G0412400 Rorug05G0412500
rosa_samantha Rh1AG118000 Rh1BG088900 Rh1CG112900 Rh5AG467800 Rh5AG467900 Rh5AG468100 Rh5AG468200 Rh5AG468300 Rh5AG468400 Rh5AG468500 Rh5AG468600 Rh5BG486300 Rh5BG486400 Rh5BG486600 Rh5BG486700 Rh5BG486800 Rh5BG487100 Rh5BG487200 Rh5BG487300 Rh5BG487400 Rh5BG487500 Rh5BG487700 Rh5CG510700 Rh5CG510800 Rh5CG511000 Rh5CG511100 Rh5CG511200 Rh5CG511400 Rh5CG511500 Rh5CG511600 Rh5CG511700 Rh5CG511900 Rh5DG497500 Rh5DG497600 Rh5DG497700 Rh5DG498000 Rh5DG498300 Rh5DG498400 Rh5DG498500 Rh5DG498600 Rh5DG498700
rosa_wichuraiana Rw5G043460 Rw5G043470 Rw5G043480 Rw5G043490 Rw5G043500 Rw5G043510 Rw5G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccB1I GGYRCC 2 cut(s) 148, 380
AciI CCGC 2 cut(s) 405, 840
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 3 cut(s) 194, 833, 887
AjnI CCWGG 2 cut(s) 52, 500
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 2 cut(s) 190, 336
AluI AGCT 2 cut(s) 190, 336
Alw26I GTCTC 1 cut(s) 870
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 441, 795, 889
ApeKI GCWGC 1 cut(s) 333
AseI ATTAAT 1 cut(s) 257
AspLEI GCGC 2 cut(s) 414, 745
AspS9I GGNCC 4 cut(s) 251, 442, 706, 795
AsuHPI GGTGA 2 cut(s) 222, 275
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 2 cut(s) 251, 706
BaeGI GKGCMC 2 cut(s) 385, 501
BanI GGYRCC 2 cut(s) 148, 380
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 2 cut(s) 54, 502
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 2 cut(s) 317, 534
BfuAI ACCTGC 1 cut(s) 90
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 54, 502
Bme18I GGWCC 2 cut(s) 251, 706
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 4 cut(s) 251, 442, 706, 795
BmiI GGNNCC 2 cut(s) 150, 382
BmrFI CCNGG 2 cut(s) 54, 502
BmsI GCATC 2 cut(s) 306, 460
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 436
Bsa29I ATCGAT 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 623
BsaJI CCNNGG 4 cut(s) 52, 354, 445, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 54, 502
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 52, 354, 445, 500
BseGI GGATG 3 cut(s) 48, 126, 397
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 585, 684
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 740
BseSI GKGCMC 2 cut(s) 385, 501
BseXI GCAGC 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 734
BshFI GGCC 3 cut(s) 443, 797, 891
BshNI GGYRCC 2 cut(s) 148, 380
BshVI ATCGAT 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 511, 584
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 870
BsmFI GGGAC 2 cut(s) 511, 584
BsnI GGCC 3 cut(s) 443, 797, 891
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 385, 501
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 218, 628
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 2 cut(s) 405, 840
BspANI GGCC 3 cut(s) 443, 797, 891
BspCNI CTCAG 2 cut(s) 584, 685
BspDI ATCGAT 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 150, 382
BspMI ACCTGC 1 cut(s) 90
BspT107I GGYRCC 2 cut(s) 148, 380
BsrDI GCAATG 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 4 cut(s) 52, 354, 445, 500
BssMI GATC 2 cut(s) 218, 628
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 54, 502
BstAUI TGTACA 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 295, 403, 741
BstDEI CTNAG 2 cut(s) 571, 693
BstDSI CCRYGG 2 cut(s) 354, 445
BstF5I GGATG 3 cut(s) 48, 126, 397
BstHHI GCGC 2 cut(s) 414, 745
BstKTI GATC 2 cut(s) 221, 631
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 2 cut(s) 218, 628
BstMWI GCNNNNNNNGC 2 cut(s) 411, 740
BstNI CCWGG 2 cut(s) 54, 502
BstSCI CCNGG 2 cut(s) 52, 500
BstSLI GKGCMC 2 cut(s) 385, 501
BstSNI TACGTA 1 cut(s) 623
BstV1I GCAGC 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 627
BsuRI GGCC 3 cut(s) 443, 797, 891
BsuTUI ATCGAT 1 cut(s) 627
BtgI CCRYGG 2 cut(s) 354, 445
BtsCI GGATG 3 cut(s) 48, 126, 397
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 295, 403, 741
CfoI GCGC 2 cut(s) 414, 745
Cfr13I GGNCC 4 cut(s) 251, 442, 706, 795
ClaI ATCGAT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 346
CviAII CATG 8 cut(s) 131, 144, 355, 484, 637, 754, 821, 893
CviJI RGCY 8 cut(s) 190, 316, 336, 443, 692, 739, 797, 891
CviKI_1 RGCY 8 cut(s) 190, 316, 336, 443, 692, 739, 797, 891
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 571, 693
DpnI GATC 2 cut(s) 220, 630
DpnII GATC 2 cut(s) 218, 628
DraIII CACNNNGTG 1 cut(s) 560
Eco105I TACGTA 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 251, 706
Eco88I CYCGRG 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 52, 500
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 8 cut(s) 134, 147, 358, 487, 640, 757, 824, 896
FaqI GGGAC 2 cut(s) 511, 584
FatI CATG 8 cut(s) 130, 143, 354, 483, 636, 753, 820, 892
FauI CCCGC 1 cut(s) 833
FauNDI CATATG 1 cut(s) 434
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 3 cut(s) 35, 113, 404
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 2 cut(s) 317, 534
GlaI GCGC 2 cut(s) 413, 744
GluI GCNGC 1 cut(s) 334
GsaI CCCAGC 1 cut(s) 738
HaeIII GGCC 3 cut(s) 443, 797, 891
HhaI GCGC 2 cut(s) 414, 745
Hin1II CATG 8 cut(s) 134, 147, 358, 487, 640, 757, 824, 896
Hin6I GCGC 2 cut(s) 412, 743
HinP1I GCGC 2 cut(s) 412, 743
HinfI GANTC 2 cut(s) 102, 320
HphI GGTGA 2 cut(s) 222, 275
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 1 cut(s) 609
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 6 cut(s) 575, 682, 767, 786, 830, 877
HpyCH4IV ACGT 3 cut(s) 37, 210, 622
HpyCH4V TGCA 3 cut(s) 333, 401, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 740
HpyF3I CTNAG 2 cut(s) 571, 693
HpySE526I ACGT 3 cut(s) 37, 210, 622
Hsp92II CATG 8 cut(s) 134, 147, 358, 487, 640, 757, 824, 896
HspAI GCGC 2 cut(s) 412, 743
Kzo9I GATC 2 cut(s) 218, 628
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 306, 460
MaeI CTAG 2 cut(s) 317, 534
MaeII ACGT 3 cut(s) 37, 210, 622
MaeIII GTNAC 1 cut(s) 715
MalI GATC 2 cut(s) 220, 630
MboI GATC 2 cut(s) 218, 628
MboII GAAGA 4 cut(s) 54, 146, 801, 845
MfeI CAATTG 2 cut(s) 246, 512
MhlI GDGCHC 2 cut(s) 385, 501
MluCI AATT 3 cut(s) 246, 277, 512
MmeI TCCRAC 3 cut(s) 545, 741, 853
Mph1103I ATGCAT 1 cut(s) 898
MseI TTAA 4 cut(s) 215, 257, 464, 807
MslI CAYNNNNRTG 5 cut(s) 129, 288, 353, 437, 534
MspR9I CCNGG 2 cut(s) 54, 502
MunI CAATTG 2 cut(s) 246, 512
MvaI CCWGG 2 cut(s) 54, 502
MwoI GCNNNNNNNGC 2 cut(s) 411, 740
NcoI CCATGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 434
NdeII GATC 2 cut(s) 218, 628
NlaIII CATG 8 cut(s) 134, 147, 358, 487, 640, 757, 824, 896
NlaIV GGNNCC 2 cut(s) 150, 382
NsiI ATGCAT 1 cut(s) 898
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 102, 320
PkrI GCNGC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 623
PshBI ATTAAT 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 52, 500
PspFI CCCAGC 1 cut(s) 734
PspGI CCWGG 2 cut(s) 52, 500
PspN4I GGNNCC 2 cut(s) 150, 382
PspPI GGNCC 4 cut(s) 251, 442, 706, 795
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 5 cut(s) 129, 288, 353, 437, 534
SaqAI TTAA 4 cut(s) 215, 257, 464, 807
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 2 cut(s) 218, 628
Sau96I GGNCC 4 cut(s) 251, 442, 706, 795
ScrFI CCNGG 2 cut(s) 54, 502
SduI GDGCHC 2 cut(s) 385, 501
SfaNI GCATC 2 cut(s) 306, 460
SinI GGWCC 2 cut(s) 251, 706
SmiMI CAYNNNNRTG 5 cut(s) 129, 288, 353, 437, 534
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
SnaBI TACGTA 1 cut(s) 623
Sse9I AATT 3 cut(s) 246, 277, 512
SsiI CCGC 2 cut(s) 405, 840
SspI AATATT 1 cut(s) 225
SspMI CTAG 2 cut(s) 317, 534
StyD4I CCNGG 2 cut(s) 52, 500
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 3 cut(s) 40, 213, 625
TaqI TCGA 4 cut(s) 65, 207, 300, 627
TasI AATT 3 cut(s) 246, 277, 512
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 102, 320
Tru1I TTAA 4 cut(s) 215, 257, 464, 807
Tru9I TTAA 4 cut(s) 215, 257, 464, 807
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 7 cut(s) 48, 82, 147, 360, 421, 742, 786
TspGWI ACGGA 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 251, 706
VspI ATTAAT 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XspI CTAG 2 cut(s) 317, 534
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.