FvH4_4g02370

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000511
Physical Location & Seq
Forward (+)
2172837 .. 2176043
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02370.t1

Sequence Viewer

Length: 2016 bp
ATGCTTGGCCTAGTAAACAAGGTGGCCTCAGTAATCCACCACCCTCATAGCCCGTTTGCCAAGTCTGACAAGAAGATCTTGGATGATATTTACACTACTCATGTCCATGCTGATGATTCCTTCGATGACGATTCTCTTTTCATCATTGTTGAGAGTATCCTCAAGCGTGCAACCCAAACTGTCGATAAAATTGTGCAGGGTACCCAAGTGCATGTGGAAGACATAGAGGAGCAAACCCCCAAAGCCAACTTCAGTGTACCATTGTGCACGCTTAAGGGAATCTCCTGCGAGATGCAATGCAAGCCTCCTGGTGAAGAAATCGCCCATGAGACAACACTGGCAATACTACACAAGCTGTCAAAGTATTCATGGGAAGCAAAGGCATCACTGACCCTGGCAGCTTTTGCTATGGAGTTTGGTGAATTCTGGCTCCTTGCAGAGCTTCGTGAATCAAACCACCTTGCCAGGTCAATTGCAATTCTCAAACGACTCCCTGTTCTCCTCAAGCCTTCTCAGCTGCACAAGCGCAGGCAAGCAATACTTGAGCTTAACAATCTGATCAAGGCCACACTGGAAGTCATTACATGCATCGACCAGTTCAACAAGCTTTCCATTTATGACCTGAATGATGTCCCCGAGTTGTCGGGAACATTGGATCATGTTCCGGTGGACGTATATTGGGCTATCATGACTGTTGTGGCTTGTGCCACTAAGATCACACTACTCACTAGTGATGAGGACAAAGAATTTGACCTATCTCCCTATTCTCAAAAGATCCACTTTGTCCTTAACAAGCTCAAGACGCAGCTAACAATTTGCAGAGCACGAATTGAGTTCATAGAAAATTATAAAAAGCTCAAGAAACTGTTCCGAACACCTACTGAAATTATGGAAATCTTTAAGGGTTTGTTATTTACAAAGGATAATGTCCAGCCACTCGTTGATTGTTCCACTAAACAAACGGTGAGCATCGAAATCCTAAGGAGGAAGAATGTGCTATTCTTCATTTCCAGCCTCGACATTACGGATGACGACATTTCGATTCTGAAACCGGTCCACGAGTTCACAAAGAAAGACAATCAGTATAAGATTGTGTGGATACCGATTGTGGAGCAATGGACCGATGAGCTGAGAAAGAAATTTGAAATCCTGAAGAACAAGATGCCGTGGTATACGGTGCAGTACTCTGGACCTATTGCAGGCATCAAGTTCATCAAGGAGGAGTGGAACTTCAAGGGTAAGCCATTACTGGTAGTGATGAACCCACAAGGAAAGGTCGAACACTCTAACGCTCTTCACATGATTCGGGTGTGGGGAGTCAAGGCCTTCCCTTTCACAGAGACGATAGAGAAAGAGCTGTCATCAGATTCTCATGGAGGAATTCACTCTATAGTTGTTGACGGAATTCACCCTTCTGTGCCATCTTACATCAGAGATAATAAGTACATCTTCTTCTATGGCGGTAAGGACAACGAATGGATTCAGCAATTCACAAAGAAAGCAACTGCCCTTGCAAACGATCCTATCTTGAAGGAGGCAAAGATTTACATAGAGTTGGTTTGCGTTGGAAAAGGCAGCAAAGGAGAAGATGACCATGGCATTCTAGGCCGCTTCTGGACCGGTATAGAAAGCTTGTTCCTCACCAAAGTCCACAAGCACGTTGATCCGATCGGTCAAGAAATTCAGAAGCTTGTCTCTTACAAGAACGAAAGTGGATGGGTGTTGCTTACCAAAGGATCAACTTTGTTGGTCACAGGTCATGGTATCTCCGCATTGAAGGTGGTAGAGGACTTTGAGAAATGGAGGGAGCATGTCAAGGAGAAAGGGTTTGAGTATTGTTTCAAGGCCTATTATGGGAAGGTTATTCAGGCGGGTCGACCTTGTTGCCGTCTTGACATTCCGGGGTCTACCGGAAAGGTTCCGGAGTCGATGAAGTGCCCTGATTGTCACCGTAGTATGGAGACTTTTATCAGTTACAAGTGCTGCCACATTGATGGTCCAACTGCACATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

672

Amino Acids

76.48

Weight (kDa)

7.59

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 22 - 293 6.2e-84 Sieve element occlusion N-terminus
SEO_C PF14577 464 - 530 4.2e-13 Sieve element occlusion C-terminus
SEO_C PF14577 538 - 663 2.4e-31 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 849
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 3 cut(s) 1172, 1876, 1907
AccIII TCCGGA 1 cut(s) 1921
AciI CCGC 4 cut(s) 1461, 1609, 1770, 1871
AclWI GGATC 5 cut(s) 663, 769, 1514, 1658, 1744
AcsI RAATTY 6 cut(s) 422, 746, 1139, 1380, 1404, 1680
AcuI CTGAAG 2 cut(s) 235, 1172
AfaI GTAC 4 cut(s) 202, 258, 1184, 1445
AfiI CCNNNNNNNGG 3 cut(s) 1199, 1854, 1957
AflII CTTAAG 1 cut(s) 272
AgeI ACCGGT 2 cut(s) 1051, 1619
AgsI TTSAA 6 cut(s) 601, 1145, 1234, 1531, 1777, 1843
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 3 cut(s) 307, 393, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
Alw21I GWGCWC 2 cut(s) 269, 826
Alw26I GTCTC 4 cut(s) 323, 1334, 1699, 1955
Alw44I GTGCAC 1 cut(s) 265
AlwI GGATC 5 cut(s) 663, 769, 1514, 1658, 1744
Ama87I CYCGRG 1 cut(s) 635
Aor13HI TCCGGA 1 cut(s) 1921
AoxI GGCC 6 cut(s) 7, 24, 564, 1323, 1606, 1845
ApaLI GTGCAC 1 cut(s) 265
ApeKI GCWGC 5 cut(s) 398, 517, 805, 1575, 1983
ApoI RAATTY 6 cut(s) 422, 746, 1139, 1380, 1404, 1680
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AsiGI ACCGGT 2 cut(s) 1051, 1619
Asp700I GAANNNNTTC 2 cut(s) 866, 1479
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
AsuC2I CCSGG 1 cut(s) 1902
AsuHPI GGTGA 6 cut(s) 323, 431, 976, 1400, 1633, 1940
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
AxyI CCTNAGG 1 cut(s) 980
BaeGI GKGCMC 2 cut(s) 269, 1940
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 1436, 1468
BauI CACGAG 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 269, 826
BbvI GCAGC 5 cut(s) 410, 504, 817, 1587, 1970
BccI CCATC 3 cut(s) 1429, 1710, 1988
BceAI ACGGC 2 cut(s) 1150, 1872
BcgI CGANNNNNNTGC 2 cut(s) 1866, 1900
BciT130I CCWGG 3 cut(s) 309, 395, 466
BciVI GTATCC 2 cut(s) 167, 1092
BclI TGATCA 1 cut(s) 558
BcnI CCSGG 1 cut(s) 1902
BcoDI GTCTC 4 cut(s) 323, 1334, 1699, 1955
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 3 cut(s) 11, 729, 1604
BfmI CTRYAG 1 cut(s) 1389
BfrI CTTAAG 1 cut(s) 272
BfuI GTATCC 2 cut(s) 167, 1092
BglII AGATCT 1 cut(s) 75
BisI GCNGC 6 cut(s) 399, 518, 806, 1576, 1609, 1984
BlsI GCNGC 6 cut(s) 400, 519, 807, 1577, 1610, 1985
BmcAI AGTACT 1 cut(s) 1184
Bme1390I CCNGG 4 cut(s) 309, 395, 466, 1902
Bme18I GGWCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
BmiI GGNNCC 3 cut(s) 202, 431, 1920
BmrFI CCNGG 4 cut(s) 309, 395, 466, 1902
BmsI GCATC 6 cut(s) 282, 392, 597, 978, 1152, 1212
BpiI GAAGAC 1 cut(s) 225
BpuEI CTTGAG 5 cut(s) 146, 488, 563, 782, 842
BpuMI CCSGG 1 cut(s) 1902
BsaJI CCNNGG 4 cut(s) 393, 1166, 1594, 1901
BsaWI WCCGGW 5 cut(s) 664, 1051, 1619, 1910, 1921
BsaXI ACNNNNNCTCC 2 cut(s) 1811, 1841
Bsc4I CCNNNNNNNGG 3 cut(s) 1199, 1854, 1957
Bse118I RCCGGY 2 cut(s) 1051, 1619
Bse1I ACTGG 4 cut(s) 342, 576, 595, 1254
Bse21I CCTNAGG 1 cut(s) 980
Bse3DI GCAATG 2 cut(s) 302, 1121
BseAI TCCGGA 1 cut(s) 1921
BseBI CCWGG 3 cut(s) 309, 395, 466
BseDI CCNNGG 4 cut(s) 393, 1166, 1594, 1901
BseGI GGATG 3 cut(s) 88, 1033, 1721
BseLI CCNNNNNNNGG 3 cut(s) 1199, 1854, 1957
BseMI GCAATG 2 cut(s) 302, 1121
BseMII CTCAG 3 cut(s) 42, 527, 1121
BseNI ACTGG 4 cut(s) 342, 576, 595, 1254
BseRI GAGGAG 3 cut(s) 242, 491, 1235
BseSI GKGCMC 2 cut(s) 269, 1940
BseXI GCAGC 5 cut(s) 410, 504, 817, 1587, 1970
BsgI GTGCAG 4 cut(s) 215, 503, 1199, 1989
Bsh1285I CGRYCG 1 cut(s) 1671
BshFI GGCC 6 cut(s) 9, 26, 566, 1325, 1608, 1847
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 2 cut(s) 1051, 1619
BsiEI CGRYCG 1 cut(s) 1671
BsiHKAI GWGCWC 2 cut(s) 269, 826
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 6 cut(s) 665, 1052, 1620, 1901, 1911, 1922
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 3 cut(s) 1199, 1854, 1957
BsmAI GTCTC 4 cut(s) 323, 1334, 1699, 1955
BsmBI CGTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 1599
BsnI GGCC 6 cut(s) 9, 26, 566, 1325, 1608, 1847
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 269, 826, 1940
Bsp13I TCCGGA 1 cut(s) 1921
Bsp143I GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
Bsp19I CCATGG 1 cut(s) 1594
BspACI CCGC 4 cut(s) 1461, 1609, 1770, 1871
BspANI GGCC 6 cut(s) 9, 26, 566, 1325, 1608, 1847
BspCNI CTCAG 3 cut(s) 41, 526, 1122
BspEI TCCGGA 1 cut(s) 1921
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 3 cut(s) 202, 431, 1920
BspPI GGATC 5 cut(s) 663, 769, 1514, 1658, 1744
BspQI GCTCTTC 1 cut(s) 1299
BspT107I GGYRCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 302, 1121
BsrFI RCCGGY 2 cut(s) 1051, 1619
BsrI ACTGG 4 cut(s) 342, 576, 595, 1254
BssAI RCCGGY 2 cut(s) 1051, 1619
BssECI CCNNGG 4 cut(s) 393, 1166, 1594, 1901
BssMI GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
BssNAI GTATAC 1 cut(s) 1173
BssSI CACGAG 1 cut(s) 1058
BssT1I CCWWGG 1 cut(s) 1594
Bst1107I GTATAC 1 cut(s) 1173
Bst2BI CACGAG 1 cut(s) 1058
Bst2UI CCWGG 3 cut(s) 309, 395, 466
Bst4CI ACNGT 6 cut(s) 181, 694, 867, 964, 1177, 1952
Bst6I CTCTTC 1 cut(s) 1299
BstAFI CTTAAG 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 6 cut(s) 168, 269, 302, 530, 534, 1201
BstDEI CTNAG 5 cut(s) 28, 513, 711, 980, 1130
BstDSI CCRYGG 2 cut(s) 1166, 1594
BstENI CCTNNNNNAGG 1 cut(s) 1197
BstF5I GGATG 3 cut(s) 88, 1033, 1721
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 9 cut(s) 78, 561, 658, 717, 777, 1522, 1666, 1671, 1739
BstMAI GTCTC 4 cut(s) 323, 1334, 1699, 1955
BstMBI GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
BstMCI CGRYCG 1 cut(s) 1671
BstMWI GCNNNNNNNGC 6 cut(s) 301, 404, 514, 523, 802, 1605
BstNI CCWGG 3 cut(s) 309, 395, 466
BstNSI RCATGY 3 cut(s) 215, 588, 1814
BstSCI CCNGG 4 cut(s) 307, 393, 464, 1900
BstSFI CTRYAG 1 cut(s) 1389
BstSLI GKGCMC 2 cut(s) 269, 1940
BstV1I GCAGC 5 cut(s) 410, 504, 817, 1587, 1970
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 2 cut(s) 75, 774
BstXI CCANNNNNNTGG 1 cut(s) 1994
BstYI RGATCY 2 cut(s) 75, 774
BstZ17I GTATAC 1 cut(s) 1173
Bsu36I CCTNAGG 1 cut(s) 980
BsuI GTATCC 2 cut(s) 167, 1092
BsuRI GGCC 6 cut(s) 9, 26, 566, 1325, 1608, 1847
BtgI CCRYGG 2 cut(s) 1166, 1594
BtsCI GGATG 3 cut(s) 88, 1033, 1721
BtsIMutI CAGTG 4 cut(s) 259, 335, 386, 569
Cac8I GCNNGC 6 cut(s) 168, 269, 302, 530, 534, 1201
CciI TCATGA 1 cut(s) 687
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 2 cut(s) 1051, 1619
Cfr13I GGNCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
CseI GACGC 1 cut(s) 811
Csp6I GTAC 4 cut(s) 201, 257, 1183, 1444
CspAI ACCGGT 2 cut(s) 1051, 1619
CviQI GTAC 4 cut(s) 201, 257, 1183, 1444
DdeI CTNAG 5 cut(s) 28, 513, 711, 980, 1130
DpnI GATC 9 cut(s) 77, 560, 657, 716, 776, 1521, 1665, 1670, 1738
DpnII GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
Eam1104I CTCTTC 1 cut(s) 1299
EarI CTCTTC 1 cut(s) 1299
Eco130I CCWWGG 1 cut(s) 1594
Eco147I AGGCCT 2 cut(s) 1325, 1847
Eco47I GGWCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
Eco57I CTGAAG 2 cut(s) 235, 1172
Eco81I CCTNAGG 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 635
EcoNI CCTNNNNNAGG 1 cut(s) 1197
EcoRI GAATTC 3 cut(s) 422, 1380, 1404
EcoRII CCWGG 3 cut(s) 307, 393, 464
EcoT14I CCWWGG 1 cut(s) 1594
EcoT22I ATGCAT 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 1594
Esp3I CGTCTC 1 cut(s) 1334
FalI AAGNNNNNCTT 8 cut(s) 62, 94, 525, 557, 764, 796, 1433, 1465
FaqI GGGAC 1 cut(s) 617
FauI CCCGC 1 cut(s) 1864
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 3 cut(s) 1172, 1876, 1907
Fnu4HI GCNGC 6 cut(s) 399, 518, 806, 1576, 1609, 1984
FokI GGATG 3 cut(s) 95, 1040, 1728
Fsp4HI GCNGC 6 cut(s) 399, 518, 806, 1576, 1609, 1984
FspBI CTAG 3 cut(s) 11, 729, 1604
GlaI GCGC 1 cut(s) 527
GluI GCNGC 6 cut(s) 399, 518, 806, 1576, 1609, 1984
HaeIII GGCC 6 cut(s) 9, 26, 566, 1325, 1608, 1847
HapII CCGG 6 cut(s) 665, 1052, 1620, 1901, 1911, 1922
HgaI GACGC 1 cut(s) 811
HhaI GCGC 1 cut(s) 528
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 2 cut(s) 1399, 1877
HindII GTYRAC 2 cut(s) 1399, 1877
HindIII AAGCTT 3 cut(s) 605, 1630, 1688
HpaII CCGG 6 cut(s) 665, 1052, 1620, 1901, 1911, 1922
HphI GGTGA 6 cut(s) 323, 431, 976, 1400, 1633, 1940
Hpy188I TCNGA 8 cut(s) 67, 558, 872, 1047, 1366, 1433, 1668, 1686
HpyAV CCTTC 7 cut(s) 130, 519, 1336, 1422, 1525, 1771, 1852
HpyCH4III ACNGT 6 cut(s) 181, 694, 867, 964, 1177, 1952
HpyCH4IV ACGT 2 cut(s) 672, 1659
HpyF10VI GCNNNNNNNGC 6 cut(s) 301, 404, 514, 523, 802, 1605
HpyF3I CTNAG 5 cut(s) 28, 513, 711, 980, 1130
HpySE526I ACGT 2 cut(s) 672, 1659
HspAI GCGC 1 cut(s) 526
Kpn2I TCCGGA 1 cut(s) 1921
KpnI GGTACC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
LguI GCTCTTC 1 cut(s) 1299
LmnI GCTCC 4 cut(s) 229, 435, 1111, 1807
Lsp1109I GCAGC 5 cut(s) 410, 504, 817, 1587, 1970
LweI GCATC 6 cut(s) 282, 392, 597, 978, 1152, 1212
MaeI CTAG 3 cut(s) 11, 729, 1604
MaeII ACGT 2 cut(s) 672, 1659
MaeIII GTNAC 3 cut(s) 1750, 1946, 1973
MalI GATC 9 cut(s) 77, 560, 657, 716, 776, 1521, 1665, 1670, 1738
MboI GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 2 cut(s) 75, 774
MhlI GDGCHC 3 cut(s) 269, 826, 1940
MlyI GAGTC 3 cut(s) 483, 1326, 1934
MmeI TCCRAC 1 cut(s) 1546
Mph1103I ATGCAT 1 cut(s) 590
MroI TCCGGA 1 cut(s) 1921
MroXI GAANNNNTTC 2 cut(s) 866, 1479
MseI TTAA 4 cut(s) 273, 549, 789, 900
MslI CAYNNNNRTG 3 cut(s) 105, 111, 1992
MspA1I CMGCKG 1 cut(s) 517
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 6 cut(s) 665, 1052, 1620, 1901, 1911, 1922
MspR9I CCNGG 4 cut(s) 309, 395, 466, 1902
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 1599
MvaI CCWGG 3 cut(s) 309, 395, 466
MwoI GCNNNNNNNGC 6 cut(s) 301, 404, 514, 523, 802, 1605
NciI CCSGG 1 cut(s) 1902
NcoI CCATGG 1 cut(s) 1594
NdeII GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
NlaIV GGNNCC 3 cut(s) 202, 431, 1920
NmuCI GTSAC 2 cut(s) 1750, 1946
NsiI ATGCAT 1 cut(s) 590
NspI RCATGY 3 cut(s) 215, 588, 1814
PagI TCATGA 1 cut(s) 687
PceI AGGCCT 2 cut(s) 1325, 1847
PciSI GCTCTTC 1 cut(s) 1299
PctI GAATGC 1 cut(s) 1599
PdmI GAANNNNTTC 2 cut(s) 866, 1479
PfeI GAWTC 8 cut(s) 116, 131, 279, 449, 1042, 1303, 1367, 1480
PinAI ACCGGT 2 cut(s) 1051, 1619
PkrI GCNGC 6 cut(s) 400, 519, 807, 1577, 1610, 1985
Ple19I CGATCG 1 cut(s) 1671
PleI GAGTC 3 cut(s) 483, 1325, 1933
PpsI GAGTC 3 cut(s) 483, 1325, 1933
PsiI TTATAA 1 cut(s) 849
Psp6I CCWGG 3 cut(s) 307, 393, 464
PspGI CCWGG 3 cut(s) 307, 393, 464
PspN4I GGNNCC 3 cut(s) 202, 431, 1920
PspPI GGNCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
PsuI RGATCY 2 cut(s) 75, 774
PvuI CGATCG 1 cut(s) 1671
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 4 cut(s) 202, 258, 1184, 1445
RsaNI GTAC 4 cut(s) 201, 257, 1183, 1444
RseI CAYNNNNRTG 3 cut(s) 105, 111, 1992
SalI GTCGAC 1 cut(s) 1875
SapI GCTCTTC 1 cut(s) 1299
SaqAI TTAA 4 cut(s) 273, 549, 789, 900
SatI GCNGC 6 cut(s) 399, 518, 806, 1576, 1609, 1984
Sau3AI GATC 9 cut(s) 75, 558, 655, 714, 774, 1519, 1663, 1668, 1736
Sau96I GGNCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
ScaI AGTACT 1 cut(s) 1184
SchI GAGTC 3 cut(s) 483, 1326, 1934
ScrFI CCNGG 4 cut(s) 309, 395, 466, 1902
SduI GDGCHC 3 cut(s) 269, 826, 1940
SfaNI GCATC 6 cut(s) 282, 392, 597, 978, 1152, 1212
SfcI CTRYAG 1 cut(s) 1389
SinI GGWCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
SmiMI CAYNNNNRTG 3 cut(s) 105, 111, 1992
SmlI CTYRAG 6 cut(s) 161, 272, 503, 542, 797, 857
SmoI CTYRAG 6 cut(s) 161, 272, 503, 542, 797, 857
SpeI ACTAGT 1 cut(s) 728
SseBI AGGCCT 2 cut(s) 1325, 1847
SsiI CCGC 4 cut(s) 1461, 1609, 1770, 1871
SspMI CTAG 3 cut(s) 11, 729, 1604
StuI AGGCCT 2 cut(s) 1325, 1847
StyD4I CCNGG 4 cut(s) 307, 393, 464, 1900
StyI CCWWGG 1 cut(s) 1594
TaaI ACNGT 6 cut(s) 181, 694, 867, 964, 1177, 1952
TaiI ACGT 2 cut(s) 675, 1662
TaqI TCGA 9 cut(s) 123, 183, 591, 972, 1017, 1040, 1278, 1876, 1928
TaqII GACCGA 2 cut(s) 1136, 1661
TatI WGTACW 2 cut(s) 1182, 1443
TauI GCSGC 1 cut(s) 1611
TfiI GAWTC 8 cut(s) 116, 131, 279, 449, 1042, 1303, 1367, 1480
Tru1I TTAA 4 cut(s) 273, 549, 789, 900
Tru9I TTAA 4 cut(s) 273, 549, 789, 900
TscAI CASTG 4 cut(s) 259, 342, 393, 576
TseFI GTSAC 2 cut(s) 1750, 1946
TseI GCWGC 5 cut(s) 398, 517, 805, 1575, 1983
Tsp45I GTSAC 2 cut(s) 1750, 1946
TspDTI ATGAA 7 cut(s) 130, 357, 826, 994, 1201, 1274, 1946
TspGWI ACGGA 2 cut(s) 1040, 1416
TspRI CASTG 4 cut(s) 259, 342, 393, 576
Vha464I CTTAAG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 265
VpaK11BI GGWCC 5 cut(s) 1054, 1119, 1190, 1617, 1997
XagI CCTNNNNNAGG 1 cut(s) 1197
XapI RAATTY 6 cut(s) 422, 746, 1139, 1380, 1404, 1680
XceI RCATGY 3 cut(s) 215, 588, 1814
XmiI GTMKAC 3 cut(s) 1172, 1876, 1907
XmnI GAANNNNTTC 2 cut(s) 866, 1479
XspI CTAG 3 cut(s) 11, 729, 1604
ZrmI AGTACT 1 cut(s) 1184
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.