RchiOBHm_Chr4g0389861

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000511
Physical Location & Seq
Forward (+)
4962085 .. 4962796
712 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36296

Sequence Viewer

Length: 579 bp
ATGCAATGCAAGCCTCCTAGTGAGGAAATCGCCCACAAGACAACACTGGCAATACTCAACAAGCTCTTAAAGTATTCATGGGAAGCAAAAGCATCACTGACCCTAGCAGCTTTTGCTATGGAATGTGGTGAATCCTGGCTCCTTGCACAGCTTCGCGAATCAGACTACCTTGCCAAATCAATTGCAATTCTTAAACGAGTCCCTATTCTCCTCAAGCCTTTGGAGCTGCCCAAGCGCAAGCAATCAATACTTGAGCTTAACAATCTGATCAAGGCCACATTACAAGTGATTGAATGCATCGACCAGTTCAACAAGCTTTCCATTTATGACCCAAAAGATGTCCCCGGTTTGTCGATAGCATTGGATCATATTCCAGTGGATGTCTATTGGACTATCATGACTGTTGTGGCTTGTGCCACTAAGATCACTATACTCACTAGTGACGAGAATAAGGAATTTGATCTATCTCCCTATTCTCAAAAAATCCACTATGTCCTTAACAAGCTCAAGATACAGCTAATAGTTTGTAGAAAACAAATTGGTGGGTTACTTGTTTTAATTTTTTTTTTTTTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

8.52

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 1 - 181 2.2e-56 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 455
AgsI TTSAA 2 cut(s) 293, 310
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 8 cut(s) 64, 110, 151, 226, 256, 316, 505, 517
AluI AGCT 8 cut(s) 64, 110, 151, 226, 256, 316, 505, 517
AlwI GGATC 1 cut(s) 372
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 107, 226
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 140
BbvI GCAGC 2 cut(s) 119, 213
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 1 cut(s) 267
BcnI CCSGG 1 cut(s) 345
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 18, 104, 438
BisI GCNGC 2 cut(s) 108, 227
BlsI GCNGC 2 cut(s) 109, 228
Bme1390I CCNGG 2 cut(s) 136, 345
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 136, 345
BmsI GCATC 2 cut(s) 101, 306
BpuEI CTTGAG 3 cut(s) 197, 272, 491
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 343
Bse1I ACTGG 3 cut(s) 51, 304, 374
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 3 cut(s) 51, 304, 374
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 119, 213
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 185, 326
BsmFI GGGAC 2 cut(s) 185, 326
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 275
Bsp143I GATC 4 cut(s) 267, 364, 423, 460
Bsp68I TCGCGA 1 cut(s) 156
BspANI GGCC 1 cut(s) 275
BspFNI CGCG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 3 cut(s) 51, 304, 374
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 4 cut(s) 267, 364, 423, 460
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 11, 239
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 4 cut(s) 270, 367, 426, 463
BstMBI GATC 4 cut(s) 267, 364, 423, 460
BstMWI GCNNNNNNNGC 4 cut(s) 10, 113, 223, 232
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 134, 343
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 119, 213
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 3 cut(s) 44, 95, 381
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 11, 239
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 237
CviAII CATG 2 cut(s) 78, 397
DdeI CTNAG 1 cut(s) 420
DpnI GATC 4 cut(s) 269, 366, 425, 462
DpnII GATC 4 cut(s) 267, 364, 423, 460
EcoRII CCWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 299
FaeI CATG 2 cut(s) 81, 400
FaiI YATR 7 cut(s) 79, 119, 327, 369, 398, 431, 492
FaqI GGGAC 2 cut(s) 185, 326
FatI CATG 2 cut(s) 77, 396
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 108, 227
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 108, 227
FspBI CTAG 3 cut(s) 18, 104, 438
GlaI GCGC 1 cut(s) 236
GluI GCNGC 2 cut(s) 108, 227
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 345
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 81, 400
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 131, 158, 198
HpaII CCGG 1 cut(s) 345
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 163, 267
Hpy188III TCNNGA 3 cut(s) 155, 397, 508
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 5 cut(s) 4, 9, 146, 185, 297
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 113, 223, 232
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 2 cut(s) 81, 400
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 267, 364, 423, 460
LmnI GCTCC 2 cut(s) 144, 223
LpnPI CCDG 6 cut(s) 32, 121, 148, 317, 358, 387
Lsp1109I GCAGC 2 cut(s) 119, 213
LweI GCATC 2 cut(s) 101, 306
MaeI CTAG 3 cut(s) 18, 104, 438
MaeIII GTNAC 2 cut(s) 440, 546
MalI GATC 4 cut(s) 269, 366, 425, 462
MboI GATC 4 cut(s) 267, 364, 423, 460
MfeI CAATTG 1 cut(s) 180
MluCI AATT 5 cut(s) 180, 186, 455, 537, 558
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 3 cut(s) 16, 24, 221
Mph1103I ATGCAT 1 cut(s) 299
MseI TTAA 5 cut(s) 68, 192, 258, 498, 557
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 136, 345
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 4 cut(s) 10, 113, 223, 232
NciI CCSGG 1 cut(s) 345
NdeII GATC 4 cut(s) 267, 364, 423, 460
NlaIII CATG 2 cut(s) 81, 400
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 440
NruI TCGCGA 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 299
PagI TCATGA 1 cut(s) 396
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 131, 158
PkrI GCNGC 2 cut(s) 109, 228
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 140
RruI TCGCGA 1 cut(s) 156
SaqAI TTAA 5 cut(s) 68, 192, 258, 498, 557
SatI GCNGC 2 cut(s) 108, 227
Sau3AI GATC 4 cut(s) 267, 364, 423, 460
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 136, 345
SetI ASST 9 cut(s) 66, 112, 153, 171, 228, 258, 318, 507, 519
SfaNI GCATC 2 cut(s) 101, 306
SmlI CTYRAG 3 cut(s) 212, 251, 506
SmoI CTYRAG 3 cut(s) 212, 251, 506
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 5 cut(s) 180, 186, 455, 537, 558
SspMI CTAG 3 cut(s) 18, 104, 438
StyD4I CCNGG 2 cut(s) 134, 343
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 300, 353
TasI AATT 5 cut(s) 180, 186, 455, 537, 558
TfiI GAWTC 2 cut(s) 131, 158
Tru1I TTAA 5 cut(s) 68, 192, 258, 498, 557
Tru9I TTAA 5 cut(s) 68, 192, 258, 498, 557
TscAI CASTG 3 cut(s) 51, 102, 381
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 2 cut(s) 107, 226
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 3 cut(s) 51, 102, 381
XapI RAATTY 1 cut(s) 455
XspI CTAG 3 cut(s) 18, 104, 438
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.