RLG00000009901

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000511
Physical Location & Seq
Reverse (-)
59848469 .. 59850013
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009901

Sequence Viewer

Length: 633 bp
ATGTACCGTAATAACAAGGACTGGGACTTCAAGGGTAATCCTACATCTCTGGTAATGAACCCACTGCAGGGAAACACTTTTGTCAAGGGGTATAATCAAAGGAGAAGAGGGTATGGGATGAGGACGCGGGCAGAAAGAAGCCAGCCTGGTGAAGAAGCTCTAAACCATTTGAAGAAACTGATTATCCCCAAGCAAAAATCGGAGCAAATACATGTTAATGTTGTGCAACCCATCCTTTATTATGGTTCTAATGAAGAGAAGGTTGACATCGATGTGCTGAAAAGGAAGAATTTGTTTTTGTTATTTTCCAGATTGAACATTCGGGCCGAAGTTATACACTCCCTAGAACCAATTCATGATAAACTACAGGAACATAAGAAGGGTGTGATTGTTTGGATACCCGTTGTGAAGAAGTGGACTGATGATGAACAAAAGAACTTTGTAACGTTGAGAATGAAGATGTCGTGGTACACAATCAAGTGCTTTTCACCCTTAAAGAACATGAAGCATGATTGGCACTTCAAAGGTGAGCCTATATTGACGGTGATGAACAAGTATGGGGAAGTGCATCACATTGATGCCCTTCCGCTCATTCGAGAGAAGGGAATCCGAGCATTTCCTTTCTTAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

211

Amino Acids

24.88

Weight (kDa)

9.83

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 589
AccII CGCG 1 cut(s) 127
AciI CCGC 2 cut(s) 127, 587
AclI AACGTT 1 cut(s) 446
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 5, 470
AfiI CCNNNNNNNGG 2 cut(s) 67, 68
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 4 cut(s) 31, 172, 316, 523
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AoxI GGCC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 4 cut(s) 161, 480, 539, 556
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 390
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 65, 365
BfuI GTATCC 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 568, 577
BmuI ACTGGG 1 cut(s) 31
Bsa29I ATCGAT 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 68
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 270
BseGI GGATG 2 cut(s) 123, 231
BseLI CCNNNNNNNGG 2 cut(s) 67, 68
BseNI ACTGG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 270
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 67, 68
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 326
BspACI CCGC 2 cut(s) 127, 587
BspANI GGCC 1 cut(s) 326
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 127
BspHI TCATGA 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 589
BsrI ACTGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 8, 544
Bst6I CTCTTC 2 cut(s) 100, 249
BstC8I GCNNGC 2 cut(s) 129, 143
BstF5I GGATG 2 cut(s) 123, 231
BstFNI CGCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 65, 365
BstUI CGCG 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 270
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 1 cut(s) 326
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 2 cut(s) 123, 231
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 129, 143
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 324
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 4, 469
CviAII CATG 4 cut(s) 212, 356, 502, 509
CviJI RGCY 5 cut(s) 141, 145, 158, 326, 532
CviKI_1 RGCY 5 cut(s) 141, 145, 158, 326, 532
CviQI GTAC 2 cut(s) 4, 469
Eam1104I CTCTTC 2 cut(s) 100, 249
EarI CTCTTC 2 cut(s) 100, 249
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 4 cut(s) 215, 359, 505, 512
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 211, 355, 501, 508
FauI CCCGC 1 cut(s) 120
FokI GGATG 2 cut(s) 130, 218
FspBI CTAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 215, 359, 505, 512
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 606
HphI GGTGA 4 cut(s) 161, 480, 539, 556
Hpy166II GTNNAC 3 cut(s) 265, 417, 471
Hpy188I TCNGA 2 cut(s) 202, 611
Hpy188III TCNNGA 3 cut(s) 309, 356, 596
Hpy8I GTNNAC 3 cut(s) 265, 417, 471
HpyAV CCTTC 4 cut(s) 253, 373, 593, 595
HpyCH4III ACNGT 2 cut(s) 8, 544
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 67, 226, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 4 cut(s) 215, 359, 505, 512
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 8 cut(s) 7, 35, 53, 132, 155, 159, 322, 353
LweI GCATC 2 cut(s) 568, 577
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 442
MbiI CCGCTC 1 cut(s) 589
MboII GAAGA 7 cut(s) 117, 164, 184, 266, 298, 421, 469
MluCI AATT 2 cut(s) 289, 351
MnlI CCTC 2 cut(s) 101, 114
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 3 cut(s) 216, 494, 626
MslI CAYNNNNRTG 3 cut(s) 216, 272, 576
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 514
NlaIII CATG 4 cut(s) 215, 359, 505, 512
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 355
PciI ACATGT 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 606
PscI ACATGT 1 cut(s) 211
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspPI GGNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 2 cut(s) 5, 470
RsaNI GTAC 2 cut(s) 4, 469
RseI CAYNNNNRTG 3 cut(s) 216, 272, 576
SaqAI TTAA 3 cut(s) 216, 494, 626
Sau96I GGNCC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 147
SetI ASST 5 cut(s) 160, 264, 449, 529, 632
SfaNI GCATC 2 cut(s) 568, 577
SfcI CTRYAG 2 cut(s) 65, 365
SmiMI CAYNNNNRTG 3 cut(s) 216, 272, 576
Sse9I AATT 2 cut(s) 289, 351
SsiI CCGC 2 cut(s) 127, 587
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 8, 544
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 270, 595
TasI AATT 2 cut(s) 289, 351
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 3 cut(s) 216, 494, 626
Tru9I TTAA 3 cut(s) 216, 494, 626
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 7 cut(s) 71, 267, 344, 441, 470, 518, 563
TspRI CASTG 1 cut(s) 69
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.