RchiOBHm_Chr4g0389881

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000511
Physical Location & Seq
Forward (+)
4964953 .. 4965348
396 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36298

Sequence Viewer

Length: 396 bp
ATGAGTTCACAAAGAAAGACAATCAGTATATATAAGATTGTCTGGATTCTAATTGTGGAGCAATGGACTGATGACCTGAGAAAGAAGTTTGATATCATGAAGAACAAGATGCCGTGGTTTACCGTGCAGTACTCTAGACCTATAGCAGGCCTCAAGTTCATCAAGGAGGAGTGGAACTTCAAGGGTAAGCCTACATTGGTGATGATGAACCCACAAGGAAAGGTCAAACACCCTAACGCTCTCCACATGATTCGGGTATGGGGAGCCAAGGCCTTCCCTTTCACAGAGACAACAGAAAAAGAACTGTCACATTCTCATGGAAATAAATGGGTTACCTCTGTAGTTGATGAATTCACCCATCTGTGCCAGCTTGGGTACGTATTTCTCCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

131

Amino Acids

15.49

Weight (kDa)

9.71

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 2 cut(s) 131, 377
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 2 cut(s) 148, 270
ApoI RAATTY 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 211, 346
BccI CCATC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 141, 339
BmcAI AGTACT 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 265
BmsI GCATC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 113, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 113, 267
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 182, 377
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 2 cut(s) 150, 272
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 150, 272
BspANI GGCC 2 cut(s) 150, 272
BspCNI CTCAG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 113, 267
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 124, 306
BstBAI YACGTR 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 148, 368
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 281
BstPI GGTNACC 1 cut(s) 331
BstSFI CTRYAG 2 cut(s) 141, 339
BstSNI TACGTA 1 cut(s) 379
BsuRI GGCC 2 cut(s) 150, 272
BtgI CCRYGG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 148, 368
CciI TCATGA 1 cut(s) 96
Csp6I GTAC 2 cut(s) 130, 376
CviAII CATG 3 cut(s) 97, 247, 317
CviJI RGCY 5 cut(s) 150, 190, 266, 272, 370
CviKI_1 RGCY 5 cut(s) 150, 190, 266, 272, 370
CviQI GTAC 2 cut(s) 130, 376
DdeI CTNAG 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 2 cut(s) 150, 272
Eco32I GATATC 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO65I GGTNACC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 350
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 100, 250, 320
FaiI YATR 8 cut(s) 29, 31, 33, 98, 143, 248, 259, 318
FatI CATG 3 cut(s) 96, 246, 316
FspBI CTAG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 150, 272
Hin1II CATG 3 cut(s) 100, 250, 320
HinfI GANTC 2 cut(s) 46, 250
HphI GGTGA 2 cut(s) 211, 346
Hpy166II GTNNAC 2 cut(s) 8, 120
Hpy188III TCNNGA 3 cut(s) 43, 97, 135
Hpy8I GTNNAC 2 cut(s) 8, 120
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 124, 306
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 3 cut(s) 100, 250, 320
LmnI GCTCC 2 cut(s) 58, 263
LpnPI CCDG 4 cut(s) 28, 89, 132, 380
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 306, 331
MboII GAAGA 1 cut(s) 112
MluCI AATT 2 cut(s) 51, 350
MnlI CCTC 3 cut(s) 160, 161, 346
MslI CAYNNNNRTG 1 cut(s) 315
NlaIII CATG 3 cut(s) 100, 250, 320
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 306
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 2 cut(s) 150, 272
PfeI GAWTC 2 cut(s) 46, 250
Ppu21I YACGTR 1 cut(s) 379
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 265
RsaI GTAC 2 cut(s) 131, 377
RsaNI GTAC 2 cut(s) 130, 376
RseI CAYNNNNRTG 1 cut(s) 315
ScaI AGTACT 1 cut(s) 131
SetI ASST 6 cut(s) 78, 142, 225, 338, 372, 381
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 2 cut(s) 141, 339
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 379
Sse9I AATT 2 cut(s) 51, 350
SseBI AGGCCT 2 cut(s) 150, 272
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 2 cut(s) 150, 272
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 124, 306
TaiI ACGT 1 cut(s) 381
TasI AATT 2 cut(s) 51, 350
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 2 cut(s) 46, 250
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 4 cut(s) 113, 148, 221, 363
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 1 cut(s) 350
XbaI TCTAGA 1 cut(s) 134
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.