MD00G1111000.v1.1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000511
Physical Location & Seq
Forward (+)
23221786 .. 23224610
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1111000.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGATACCCCATTTAATGCCTTCTGGTCAATCATAACTCTTGTAGCTTGCACAACTGAGCTCTCACTTCTTACCGGTGACGAGGACATTAAGTCATATGATCTATCCCCTTTTTCTCAAAAAATGGGCTTCATCCTCAACAAGCTTGATGGACAGCTTACAATCTGCCAACAAGAAAAAGAGGAGGCAAAGGCCAAGGAAAAGTTTTGGGAACTTATACGCACTGCCCCTCCTGAAATTACCGAGGTTTTCCAAAGGCTGGTTCTTTTCAAGCATAAAGCGTATCCGCAGCCTCCCATCATCAGTGTTAATCCCACTAGCAAGGAGGTTTTTAACATCGATGCGCTAAGGGGGAAGTGTGTGTTATTTTACATTTCAAGCCTGGACAATGTTTCTGATCAAGATATTTTATGTCTCAAAGAAGTGTATGAGGGAATCGATAGGCATAACAAGCGTGCGATTGTGTGGATCCCTGTTGTTGAGGACTGGACCGAAGGAGGAGAAGAGCAGTTTAAGGAATGGAGGTCTAAGATGCCATGGTACGCGGTGCAATATTTTTTGCCCCCGGCCATTGGGTACCTTGAGCAGCGGTGGAACTTCAAAGGTAATCCTATGGTGGTCGTGATGAACCAGACCGGAATTGTGGTAAACACCACCATAATCGACTTGATTCGGACACAAGCAACGGAGGCAATCGCTTTGCTTAACCTTGAGCGGCGGGTGCACATCAGAGGTAATCCTCACGAAGAGGACCCGTCGTGGATCCTCCTGGCCAGTGGACCATTTAATTCAAGGTGGTGCCCTGTTTGTACCGACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

274

Amino Acids

31.44

Weight (kDa)

5.17

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 4 - 74 5.9e-10 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 2 cut(s) 576, 798
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 715
AccII CGCG 1 cut(s) 545
AciI CCGC 5 cut(s) 287, 545, 589, 715, 718
AclWI GGATC 4 cut(s) 463, 476, 757, 770
AcoI YGGCCR 2 cut(s) 567, 771
AfaI GTAC 3 cut(s) 542, 578, 811
AfiI CCNNNNNNNGG 2 cut(s) 259, 572
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 271, 378, 601, 792
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 381, 768
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 4 cut(s) 47, 61, 145, 157
AluI AGCT 4 cut(s) 47, 61, 145, 157
Alw21I GWGCWC 2 cut(s) 63, 726
Alw26I GTCTC 1 cut(s) 419
Alw44I GTGCAC 1 cut(s) 722
AlwI GGATC 4 cut(s) 463, 476, 757, 770
AoxI GGCC 3 cut(s) 192, 567, 771
ApaLI GTGCAC 1 cut(s) 722
ApeKI GCWGC 2 cut(s) 289, 586
AsiGI ACCGGT 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 489, 751, 779
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 3 cut(s) 489, 751, 779
BaeGI GKGCMC 2 cut(s) 726, 803
BalI TGGCCA 1 cut(s) 773
BamHI GGATCC 2 cut(s) 468, 762
BanI GGYRCC 2 cut(s) 576, 798
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 63, 726
BbvI GCAGC 2 cut(s) 301, 598
BccI CCATC 2 cut(s) 143, 305
BciT130I CCWGG 2 cut(s) 383, 770
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 318
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 3 cut(s) 290, 587, 716
BlsI GCNGC 3 cut(s) 291, 588, 717
Bme1390I CCNGG 3 cut(s) 383, 566, 770
Bme18I GGWCC 3 cut(s) 489, 751, 779
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 489, 751, 779
BmiI GGNNCC 5 cut(s) 470, 578, 753, 764, 800
BmrFI CCNGG 3 cut(s) 383, 566, 770
BmsI GCATC 2 cut(s) 331, 522
Bpu10I CCTNAGC 1 cut(s) 347
BpuEI CTTGAG 2 cut(s) 602, 731
BpuMI CCSGG 1 cut(s) 566
Bsa29I ATCGAT 2 cut(s) 339, 438
BsaJI CCNNGG 4 cut(s) 195, 243, 536, 564
BsaWI WCCGGW 2 cut(s) 74, 635
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 572
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 491, 774
BseBI CCWGG 2 cut(s) 383, 770
BseCI ATCGAT 2 cut(s) 339, 438
BseDI CCNNGG 4 cut(s) 195, 243, 536, 564
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 259, 572
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 491, 774
BseRI GAGGAG 2 cut(s) 197, 513
BseSI GKGCMC 2 cut(s) 726, 803
BseXI GCAGC 2 cut(s) 301, 598
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 3 cut(s) 194, 569, 773
BshNI GGYRCC 2 cut(s) 576, 798
BshTI ACCGGT 1 cut(s) 74
BshVI ATCGAT 2 cut(s) 339, 438
BsiHKAI GWGCWC 2 cut(s) 63, 726
BsiSI CCGG 3 cut(s) 75, 566, 636
BslI CCNNNNNNNGG 2 cut(s) 259, 572
BsmAI GTCTC 1 cut(s) 419
BsnI GGCC 3 cut(s) 194, 569, 773
Bsp1286I GDGCHC 3 cut(s) 63, 726, 803
Bsp143I GATC 4 cut(s) 100, 397, 468, 762
Bsp19I CCATGG 1 cut(s) 536
BspACI CCGC 5 cut(s) 287, 545, 589, 715, 718
BspANI GGCC 3 cut(s) 194, 569, 773
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 2 cut(s) 339, 438
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 5 cut(s) 470, 578, 753, 764, 800
BspPI GGATC 4 cut(s) 463, 476, 757, 770
BspQI GCTCTTC 1 cut(s) 498
BspT107I GGYRCC 2 cut(s) 576, 798
BsrBI CCGCTC 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 491, 774
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 4 cut(s) 195, 243, 536, 564
BssMI GATC 4 cut(s) 100, 397, 468, 762
BssT1I CCWWGG 2 cut(s) 195, 536
Bst2UI CCWGG 2 cut(s) 383, 770
Bst6I CTCTTC 2 cut(s) 498, 741
BstC8I GCNNGC 2 cut(s) 49, 456
BstDEI CTNAG 3 cut(s) 57, 347, 528
BstDSI CCRYGG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 4 cut(s) 103, 400, 471, 765
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 4 cut(s) 100, 397, 468, 762
BstMWI GCNNNNNNNGC 3 cut(s) 451, 689, 721
BstNI CCWGG 2 cut(s) 383, 770
BstSCI CCNGG 3 cut(s) 381, 564, 768
BstSLI GKGCMC 2 cut(s) 726, 803
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 301, 598
BstX2I RGATCY 2 cut(s) 468, 762
BstYI RGATCY 2 cut(s) 468, 762
Bsu15I ATCGAT 2 cut(s) 339, 438
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 3 cut(s) 194, 569, 773
BsuTUI ATCGAT 2 cut(s) 339, 438
BtgI CCRYGG 1 cut(s) 536
BtsCI GGATG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 222, 310, 781
Cac8I GCNNGC 2 cut(s) 49, 456
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 489, 751, 779
ClaI ATCGAT 2 cut(s) 339, 438
Csp6I GTAC 3 cut(s) 541, 577, 810
CspAI ACCGGT 1 cut(s) 74
CviAII CATG 1 cut(s) 537
CviQI GTAC 3 cut(s) 541, 577, 810
DdeI CTNAG 3 cut(s) 57, 347, 528
DpnI GATC 4 cut(s) 102, 399, 470, 764
DpnII GATC 4 cut(s) 100, 397, 468, 762
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 567, 771
Eam1104I CTCTTC 2 cut(s) 498, 741
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 498, 741
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 195, 536
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 3 cut(s) 489, 751, 779
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 381, 768
EcoT14I CCWWGG 2 cut(s) 195, 536
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 195, 536
FaeI CATG 1 cut(s) 540
FatI CATG 1 cut(s) 536
FauI CCCGC 1 cut(s) 711
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 290, 587, 716
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 3 cut(s) 290, 587, 716
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 290, 587, 716
HaeIII GGCC 3 cut(s) 194, 569, 773
HapII CCGG 3 cut(s) 75, 566, 636
HhaI GCGC 1 cut(s) 346
Hin1II CATG 1 cut(s) 540
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 435, 670
HpaII CCGG 3 cut(s) 75, 566, 636
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 649, 724, 779
Hpy188I TCNGA 3 cut(s) 397, 675, 731
Hpy188III TCNNGA 4 cut(s) 233, 401, 622, 743
Hpy8I GTNNAC 3 cut(s) 649, 724, 779
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 2 cut(s) 31, 488
HpyCH4V TGCA 3 cut(s) 51, 550, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 451, 689, 721
HpyF3I CTNAG 3 cut(s) 57, 347, 528
Hsp92II CATG 1 cut(s) 540
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 100, 397, 468, 762
LguI GCTCTTC 1 cut(s) 498
Lsp1109I GCAGC 2 cut(s) 301, 598
LweI GCATC 2 cut(s) 331, 522
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 77
MalI GATC 4 cut(s) 102, 399, 470, 764
MbiI CCGCTC 1 cut(s) 715
MboI GATC 4 cut(s) 100, 397, 468, 762
MboII GAAGA 2 cut(s) 515, 758
MflI RGATCY 2 cut(s) 468, 762
MhlI GDGCHC 3 cut(s) 63, 726, 803
MlsI TGGCCA 1 cut(s) 773
MluCI AATT 3 cut(s) 237, 639, 787
MluNI TGGCCA 1 cut(s) 773
Mox20I TGGCCA 1 cut(s) 773
MscI TGGCCA 1 cut(s) 773
MseI TTAA 7 cut(s) 15, 90, 309, 333, 513, 705, 786
Msp20I TGGCCA 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 3 cut(s) 75, 566, 636
MspR9I CCNGG 3 cut(s) 383, 566, 770
MvaI CCWGG 2 cut(s) 383, 770
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 451, 689, 721
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 1 cut(s) 536
NdeI CATATG 1 cut(s) 97
NdeII GATC 4 cut(s) 100, 397, 468, 762
NlaIII CATG 1 cut(s) 540
NlaIV GGNNCC 5 cut(s) 470, 578, 753, 764, 800
NmuCI GTSAC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 435, 670
PflMI CCANNNNNTGG 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 3 cut(s) 291, 588, 717
PpuMI RGGWCCY 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 2 cut(s) 381, 768
PspGI CCWGG 2 cut(s) 381, 768
PspN4I GGNNCC 5 cut(s) 470, 578, 753, 764, 800
PspPI GGNCC 3 cut(s) 489, 751, 779
PspPPI RGGWCCY 1 cut(s) 751
PsuI RGATCY 2 cut(s) 468, 762
RsaI GTAC 3 cut(s) 542, 578, 811
RsaNI GTAC 3 cut(s) 541, 577, 810
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 7 cut(s) 15, 90, 309, 333, 513, 705, 786
SatI GCNGC 3 cut(s) 290, 587, 716
Sau3AI GATC 4 cut(s) 100, 397, 468, 762
Sau96I GGNCC 3 cut(s) 489, 751, 779
ScrFI CCNGG 3 cut(s) 383, 566, 770
SduI GDGCHC 3 cut(s) 63, 726, 803
SfaNI GCATC 2 cut(s) 331, 522
SinI GGWCC 3 cut(s) 489, 751, 779
SmlI CTYRAG 2 cut(s) 581, 710
SmoI CTYRAG 2 cut(s) 581, 710
Sse9I AATT 3 cut(s) 237, 639, 787
SsiI CCGC 5 cut(s) 287, 545, 589, 715, 718
SspI AATATT 1 cut(s) 554
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 381, 564, 768
StyI CCWWGG 2 cut(s) 195, 536
TaqI TCGA 3 cut(s) 339, 438, 663
TaqII GACCGA 1 cut(s) 506
TasI AATT 3 cut(s) 237, 639, 787
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 2 cut(s) 435, 670
Tru1I TTAA 7 cut(s) 15, 90, 309, 333, 513, 705, 786
Tru9I TTAA 7 cut(s) 15, 90, 309, 333, 513, 705, 786
TscAI CASTG 3 cut(s) 229, 310, 781
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 289, 586
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 121, 641
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 3 cut(s) 229, 310, 781
Van91I CCANNNNNTGG 1 cut(s) 259
VneI GTGCAC 1 cut(s) 722
VpaK11BI GGWCC 3 cut(s) 489, 751, 779
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.