Rroxscaffold_5G00335790

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000511
Physical Location & Seq
Forward (+)
3197780 .. 3326859
129080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335790.1

Sequence Viewer

Length: 1188 bp
ATGCTAGGCCTAGCGCACAATGTAGCTACCAAGGTAGCCACAGTAGTCCACACTACTCAGAAAACCATTGCTGGGGAGCTTAGTCTGTTTGCCATGTCTGACAAGAAGATCTTGGAGGAGATTTACACGACTCATGTCCATGCTGATGAATCGTTCGATGACGATTCTCTATTCGTCATTGTTGAGAACATCCTCAAGCGTGCAACCCAAAATGTTGATAAAATAGTGCAGGGTACTCAAGTGCATGTGGACAACATACAGGAGAAAACCCCCAAAGCCAGTTTCAGCGTGCCATTGTGCACGCTAAAGGGAATCTCTTGCGAGATGCAATGCAAGCCTCCTAGTGATGAAATCGCCCACAACACAACAGTGGCAATACTCAACAAGCTGTCAGAGTATTCATGGGAAGCAAAGGCATCACTGACCCTAGCAGCTTTTGCTATGGAATATGGTGAATTCTGGCTCCTGGCGCAGCTTCGCGAATCAGACCACCTTGCCAAATCAATTGCAATCCTCAAACGAGTCCCTGTTCTCCTCAAGCCGTCAGAACTGCACAAGCGCAGGCAATCAATTCTTGAGCTTAACAATCTGATCAAGGCCATACTGCAAGTGATCGAATGCATTGACCAGTTCAATAAGTATTCCACTTATGACCCAAAAGATGTCCCCAATTTGTCTATAGCATTGGATCATATTCCGGTTCATGTCTATTGGGTTATCATCACTGTTGTTGCTTGTGCCACTAAGATCACTATACTCACTAGTGATGAGGACAAGGAGTATGATCTGGCCCCTTATTCTCAAAAAATCCACTATGTCCTTAACAAGCTAACGTTTCAGCTAAGAGAGTGCAGGAAACAAATTGAGGAGGCAGACACTTACAGAAGGATCCTGAAATTGTTCCGAACCCCTACTGAAATTATGGAGGTTTTCAAGGGATTAATATTTACAAAGGATAATGTCCTGCCACTCATCGATGGTTCAGCTAAGCAAACGGTTAAGATCGACATCCTAAGGAGAAAGAATGTGTTATTGTTCATTACCAGCCTAGACATCTCCGACGATGACATTTCGATTCTGAAACCGATCCACGAGTTCACAAAGAGAGACAATCAGTATAAGATTGTCTGGATTCCCAATTGTGTGGAGCAATGGACTGATGACCTGAGAAAAAGTTTGATATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

395

Amino Acids

45.13

Weight (kDa)

6.33

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 33 - 304 1.5e-85 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AclI AACGTT 1 cut(s) 833
AclWI GGATC 4 cut(s) 696, 883, 896, 1081
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 2 cut(s) 634, 934
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 1 cut(s) 465
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 9 cut(s) 26, 79, 388, 434, 475, 580, 829, 841, 986
AluI AGCT 9 cut(s) 26, 79, 388, 434, 475, 580, 829, 841, 986
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 1101
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 4 cut(s) 696, 883, 896, 1081
AoxI GGCC 3 cut(s) 7, 597, 789
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 431, 472
ApoI RAATTY 1 cut(s) 455
AseI ATTAAT 1 cut(s) 941
Asp700I GAANNNNTTC 1 cut(s) 899
AspLEI GCGC 3 cut(s) 16, 472, 561
AspS9I GGNCC 1 cut(s) 790
AsuHPI GGTGA 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 1013
BaeGI GKGCMC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BamHI GGATCC 1 cut(s) 888
BauI CACGAG 1 cut(s) 1091
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 443, 484
BccI CCATC 1 cut(s) 971
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 1101
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 6 cut(s) 5, 11, 342, 428, 762, 1049
BfmI CTRYAG 1 cut(s) 678
BglII AGATCT 1 cut(s) 108
BisI GCNGC 2 cut(s) 432, 473
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 2 cut(s) 433, 474
Bme1390I CCNGG 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 3 cut(s) 464, 792, 890
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 315, 425
BoxI GACNNNNGTC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 4 cut(s) 179, 222, 521, 596
Bsa29I ATCGAT 1 cut(s) 975
BsaBI GATNNNNATC 1 cut(s) 1007
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 279, 628
Bse21I CCTNAGG 1 cut(s) 1013
Bse3DI GCAATG 3 cut(s) 66, 335, 1157
Bse8I GATNNNNATC 1 cut(s) 1007
BseBI CCWGG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 189, 1008
BseJI GATNNNNATC 1 cut(s) 1007
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 3 cut(s) 66, 335, 1157
BseMII CTCAG 2 cut(s) 71, 1157
BseNI ACTGG 2 cut(s) 279, 628
BseRI GAGGAG 3 cut(s) 131, 524, 881
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 443, 484
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 3 cut(s) 248, 536, 871
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 3 cut(s) 9, 599, 791
BshVI ATCGAT 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 2 cut(s) 509, 650
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 1101
BsmFI GGGAC 2 cut(s) 509, 650
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 3 cut(s) 9, 599, 791
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp68I TCGCGA 1 cut(s) 480
BspANI GGCC 3 cut(s) 9, 599, 791
BspCNI CTCAG 2 cut(s) 70, 1158
BspDI ATCGAT 1 cut(s) 975
BspFNI CGCG 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 464, 792, 890
BspPI GGATC 4 cut(s) 696, 883, 896, 1081
BsrDI GCAATG 3 cut(s) 66, 335, 1157
BsrI ACTGG 2 cut(s) 279, 628
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
BssSI CACGAG 1 cut(s) 1091
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 1091
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 43, 370, 727, 997
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 5 cut(s) 201, 290, 302, 335, 563
BstDEI CTNAG 7 cut(s) 57, 80, 744, 842, 987, 1013, 1166
BstF5I GGATG 2 cut(s) 189, 1008
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 3 cut(s) 16, 472, 561
BstKTI GATC 9 cut(s) 111, 594, 615, 691, 750, 787, 891, 1005, 1089
BstMAI GTCTC 1 cut(s) 1101
BstMBI GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
BstMWI GCNNNNNNNGC 3 cut(s) 334, 437, 469
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 678
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 443, 484
BstX2I RGATCY 2 cut(s) 108, 888
BstXI CCANNNNNNTGG 1 cut(s) 1144
BstYI RGATCY 2 cut(s) 108, 888
Bsu15I ATCGAT 1 cut(s) 975
Bsu36I CCTNAGG 1 cut(s) 1013
BsuRI GGCC 3 cut(s) 9, 599, 791
BsuTUI ATCGAT 1 cut(s) 975
BtsCI GGATG 2 cut(s) 189, 1008
BtsIMutI CAGTG 3 cut(s) 375, 419, 723
BtuMI TCGCGA 1 cut(s) 480
Cac8I GCNNGC 5 cut(s) 201, 290, 302, 335, 563
CfoI GCGC 3 cut(s) 16, 472, 561
Cfr13I GGNCC 1 cut(s) 790
ClaI ATCGAT 1 cut(s) 975
Csp6I GTAC 1 cut(s) 234
CviAII CATG 6 cut(s) 94, 134, 140, 245, 402, 704
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 7 cut(s) 57, 80, 744, 842, 987, 1013, 1166
DpnI GATC 9 cut(s) 110, 593, 614, 690, 749, 786, 890, 1004, 1088
DpnII GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 9
Eco32I GATATC 1 cut(s) 1182
Eco81I CCTNAGG 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 465
EcoRV GATATC 1 cut(s) 1182
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 6 cut(s) 97, 137, 143, 248, 405, 707
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 509, 650
FatI CATG 6 cut(s) 93, 133, 139, 244, 401, 703
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 432, 473
FokI GGATG 2 cut(s) 176, 995
Fsp4HI GCNGC 2 cut(s) 432, 473
FspBI CTAG 6 cut(s) 5, 11, 342, 428, 762, 1049
GlaI GCGC 3 cut(s) 15, 471, 560
GluI GCNGC 2 cut(s) 432, 473
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 9, 599, 791
HapII CCGG 1 cut(s) 698
HhaI GCGC 3 cut(s) 16, 472, 561
Hin1II CATG 6 cut(s) 97, 137, 143, 248, 405, 707
Hin6I GCGC 3 cut(s) 14, 470, 559
HinP1I GCGC 3 cut(s) 14, 470, 559
HinfI GANTC 8 cut(s) 130, 149, 164, 312, 482, 522, 1075, 1132
HpaII CCGG 1 cut(s) 698
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 4 cut(s) 49, 250, 300, 1098
Hpy188I TCNGA 9 cut(s) 60, 100, 394, 487, 547, 591, 905, 1060, 1080
Hpy188III TCNNGA 5 cut(s) 479, 575, 892, 1129, 1185
Hpy8I GTNNAC 4 cut(s) 49, 250, 300, 1098
Hpy99I CGWCG 1 cut(s) 1064
HpyAV CCTTC 1 cut(s) 879
HpyCH4III ACNGT 4 cut(s) 43, 370, 727, 997
HpyCH4IV ACGT 1 cut(s) 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 437, 469
HpyF3I CTNAG 7 cut(s) 57, 80, 744, 842, 987, 1013, 1166
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 6 cut(s) 97, 137, 143, 248, 405, 707
HspAI GCGC 3 cut(s) 14, 470, 559
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
LmnI GCTCC 3 cut(s) 76, 468, 1147
Lsp1109I GCAGC 2 cut(s) 443, 484
LweI GCATC 2 cut(s) 315, 425
MaeI CTAG 6 cut(s) 5, 11, 342, 428, 762, 1049
MaeII ACGT 1 cut(s) 833
MalI GATC 9 cut(s) 110, 593, 614, 690, 749, 786, 890, 1004, 1088
MboI GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 2 cut(s) 504, 1138
MflI RGATCY 2 cut(s) 108, 888
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 8 cut(s) 455, 504, 570, 670, 861, 896, 918, 1138
MlyI GAGTC 2 cut(s) 124, 531
MmeI TCCRAC 1 cut(s) 1083
MnlI CCTC 9 cut(s) 109, 203, 348, 524, 545, 763, 859, 862, 919
Mph1103I ATGCAT 1 cut(s) 623
MroXI GAANNNNTTC 1 cut(s) 899
MseI TTAA 4 cut(s) 582, 822, 941, 999
MslI CAYNNNNRTG 3 cut(s) 138, 144, 368
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 2 cut(s) 504, 1138
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 334, 437, 469
NdeII GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
NlaIII CATG 6 cut(s) 97, 137, 143, 248, 405, 707
NlaIV GGNNCC 3 cut(s) 464, 792, 890
NruI TCGCGA 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 623
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 368
PceI AGGCCT 1 cut(s) 9
PctI GAATGC 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 6 cut(s) 149, 164, 312, 482, 1075, 1132
PkrI GCNGC 2 cut(s) 433, 474
PleI GAGTC 2 cut(s) 124, 530
PpsI GAGTC 2 cut(s) 124, 530
PshAI GACNNNNGTC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 941
Psp1406I AACGTT 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 3 cut(s) 464, 792, 890
PspPI GGNCC 1 cut(s) 790
PsuI RGATCY 2 cut(s) 108, 888
RruI TCGCGA 1 cut(s) 480
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 3 cut(s) 138, 144, 368
SaqAI TTAA 4 cut(s) 582, 822, 941, 999
SatI GCNGC 2 cut(s) 432, 473
Sau3AI GATC 9 cut(s) 108, 591, 612, 688, 747, 784, 888, 1002, 1086
Sau96I GGNCC 1 cut(s) 790
SchI GAGTC 2 cut(s) 124, 531
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 2 cut(s) 315, 425
SfcI CTRYAG 1 cut(s) 678
SmiMI CAYNNNNRTG 3 cut(s) 138, 144, 368
SmlI CTYRAG 4 cut(s) 194, 237, 536, 575
SmoI CTYRAG 4 cut(s) 194, 237, 536, 575
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 8 cut(s) 455, 504, 570, 670, 861, 896, 918, 1138
SseBI AGGCCT 1 cut(s) 9
SspI AATATT 1 cut(s) 945
SspMI CTAG 6 cut(s) 5, 11, 342, 428, 762, 1049
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 4 cut(s) 43, 370, 727, 997
TaiI ACGT 1 cut(s) 836
TaqI TCGA 5 cut(s) 156, 615, 975, 1005, 1073
TasI AATT 8 cut(s) 455, 504, 570, 670, 861, 896, 918, 1138
TfiI GAWTC 6 cut(s) 149, 164, 312, 482, 1075, 1132
Tru1I TTAA 4 cut(s) 582, 822, 941, 999
Tru9I TTAA 4 cut(s) 582, 822, 941, 999
TscAI CASTG 3 cut(s) 375, 426, 730
TseI GCWGC 2 cut(s) 431, 472
TspDTI ATGAA 5 cut(s) 162, 363, 390, 692, 1027
TspRI CASTG 3 cut(s) 375, 426, 730
VneI GTGCAC 1 cut(s) 298
VspI ATTAAT 1 cut(s) 941
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 6 cut(s) 5, 11, 342, 428, 762, 1049
Zsp2I ATGCAT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.