Rorug03G0327000

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000511
Physical Location & Seq
Forward (+)
36147049 .. 36148272
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0327000.1

Sequence Viewer

Length: 372 bp
ATGGCTCTGGCATGGGGTGCTGCCGCTGCTCCATTGTTTTCTCTCCCTAAAAATCCAAAACCGAGTTTGAGATTTGGTACATTCCGATGCTCAACGAAGCCCAACAACAACGGCAACAACAAAATAGCGCTCAGGACTTGCAAGAATTGCAAAACCCAGTTCGATCCATCTCTCAATCACCTCAGGGCTTGTCGATTTCACACCGCTCATTTTGGAGGAGAAACAAAGAGGAAGTTTGAGAGTGTGTACACGGGGGGCACCATGAGTACTCCCAACTCTGGCAAAGTTGTTCAATACTGGCATTGCTGTGGGTCTGAAGATCCCTTTGACCCTGGATGTACCGCTGCTCCTCACTCCTCCTATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

123

Amino Acids

13.47

Weight (kDa)

9.21

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 3 cut(s) 24, 204, 342
AclWI GGATC 2 cut(s) 158, 314
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 4 cut(s) 79, 248, 268, 340
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 331
AlwI GGATC 2 cut(s) 158, 314
Aor51HI AGCGCT 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 20, 26, 344
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 7, 13, 331
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 4 cut(s) 21, 24, 27, 345
BlsI GCNGC 4 cut(s) 22, 25, 28, 346
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 157, 302
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 145, 196
BseNI ACTGG 2 cut(s) 157, 302
BseRI GAGGAG 3 cut(s) 231, 339, 346
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 7, 13, 331
BshNI GGYRCC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 2 cut(s) 163, 319
BspACI CCGC 3 cut(s) 24, 204, 342
BspCNI CTCAG 2 cut(s) 144, 195
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 158, 314
BspT107I GGYRCC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 157, 302
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 163, 319
Bst2UI CCWGG 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 17, 147
BstAUI TGTACA 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 131, 182
BstF5I GGATG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 166, 322
BstMBI GATC 2 cut(s) 163, 319
BstMWI GCNNNNNNNGC 3 cut(s) 17, 26, 147
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 7, 13, 331
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 341
CfoI GCGC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 78, 247, 267, 339
CviAII CATG 2 cut(s) 12, 262
CviJI RGCY 3 cut(s) 5, 100, 188
CviKI_1 RGCY 3 cut(s) 5, 100, 188
CviQI GTAC 4 cut(s) 78, 247, 267, 339
DdeI CTNAG 2 cut(s) 131, 182
DpnI GATC 2 cut(s) 165, 321
DpnII GATC 2 cut(s) 163, 319
Eco47III AGCGCT 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 15, 265
FaiI YATR 3 cut(s) 13, 263, 363
FatI CATG 2 cut(s) 11, 261
Fnu4HI GCNGC 4 cut(s) 21, 24, 27, 345
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 4 cut(s) 21, 24, 27, 345
GlaI GCGC 1 cut(s) 129
GluI GCNGC 4 cut(s) 21, 24, 27, 345
HaeII RGCGCY 1 cut(s) 131
HhaI GCGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 15, 265
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 247, 249
Hpy188I TCNGA 2 cut(s) 86, 316
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 247, 249
HpyCH4V TGCA 2 cut(s) 141, 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 26, 147
HpyF3I CTNAG 2 cut(s) 131, 182
Hsp92II CATG 2 cut(s) 15, 265
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 163, 319
LmnI GCTCC 2 cut(s) 34, 352
LpnPI CCDG 7 cut(s) 118, 169, 170, 264, 283, 318, 345
Lsp1109I GCAGC 3 cut(s) 7, 13, 331
LweI GCATC 1 cut(s) 77
MalI GATC 2 cut(s) 165, 321
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 163, 319
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 145
MnlI CCTC 5 cut(s) 191, 209, 222, 360, 367
MslI CAYNNNNRTG 2 cut(s) 85, 306
MspA1I CMGCKG 2 cut(s) 26, 344
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 17, 26, 147
NdeII GATC 2 cut(s) 163, 319
NlaIII CATG 2 cut(s) 15, 265
NlaIV GGNNCC 1 cut(s) 259
PkrI GCNGC 4 cut(s) 22, 25, 28, 346
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 4 cut(s) 79, 248, 268, 340
RsaNI GTAC 4 cut(s) 78, 247, 267, 339
RseI CAYNNNNRTG 2 cut(s) 85, 306
SatI GCNGC 4 cut(s) 21, 24, 27, 345
Sau3AI GATC 2 cut(s) 163, 319
ScaI AGTACT 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 260
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 85, 306
Sse9I AATT 1 cut(s) 145
SsiI CCGC 3 cut(s) 24, 204, 342
StyD4I CCNGG 1 cut(s) 331
TaqI TCGA 2 cut(s) 162, 193
TasI AATT 1 cut(s) 145
TatI WGTACW 2 cut(s) 246, 266
TauI GCSGC 1 cut(s) 26
TseI GCWGC 3 cut(s) 20, 26, 344
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.