Rw1G002340

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000511
Physical Location & Seq
Reverse (-)
4138130 .. 4139427
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002340.1

Sequence Viewer

Length: 888 bp
ATGGAAAGCATCCAACAAGATCTTGTCGCCCCTGCCGAGGAATTATCTGAAGTCGCTAGTACTACGACCGACAAGCAATACACCCAAGGTTGCGGTGAGGGAAGCTTGTTTACCATGTCTCCAAAAGATATCTGGGAGCTTGTTTATTCCAATCTTTACAGTGTTCCGGAGAATGATATCAGCTTTGATGTTCATTCTCTCTTCTCCGCTTCTCAAAACATCATGGCGTCTGCAGTGGAGATCATTGATCAAATTGTTCTGCACAAAAGAAAGGGGATTGATGTTCATCTTACGACCCCATACTCGAGATTGAGCTCGACATTGTGCAATCTTATCAAGTCCTTTGGCTGCGAGATATCATGCAAATGTCCAGGTGATGAAATTGTCTTTGCATCACGCACACTGGAGATACTCACCAAACTGTCGAGCTATCCGTGTGAACAACAAGCAGTGTTGGCCCTTGCCGTATTTGTTTTGGAATATGAAGAAACTCAGCAATTTGCCAAGTTGTGTGCCATCTTTGACCAAGAACCAGACCCGCCGGCGGTCAAGCAGGCAAATGAGCTGATACGAGGGGACAGAGTCATTGAGCTAAACAAGCTGATCATGGCCACGTTACAAGTGCTTCAGCACATCCTTGAGCTGAAAAACGTAATTTCTACAACTGACGACACGCCTAATTTTGGCTTTGCAGTGATGGATACCTCATTTAATGTCTACTGGTCAATCATAACCATTGTAGCTTGTGGCACTGAGCTCACTGTTCTCACTGCAGGAGACCAAGACATTACACCTTATGATCTATCCCAATTTTCGGAAAGAATCAACGTCATCGTGAGCAAACTTAAGGAGCGTTTGACAATCTGCCAACAAGAGAAAGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

295

Amino Acids

32.78

Weight (kDa)

4.51

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 58 - 292 5.3e-33 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 717
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 4 cut(s) 93, 207, 539, 545
AcoI YGGCCR 1 cut(s) 609
AcuI CTGAAG 2 cut(s) 69, 611
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 4 cut(s) 37, 544, 683, 814
AflII CTTAAG 1 cut(s) 845
AjnI CCWGG 1 cut(s) 370
Alw21I GWGCWC 2 cut(s) 317, 759
Alw26I GTCTC 2 cut(s) 123, 771
Ama87I CYCGRG 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 2 cut(s) 456, 609
ApeKI GCWGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 107, 386, 406
AvaI CYCGRG 1 cut(s) 304
BalI TGGCCA 1 cut(s) 611
BanII GRGCYC 2 cut(s) 317, 759
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
Bbv12I GWGCWC 2 cut(s) 317, 759
BbvI GCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 524, 691
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 372
BciVI GTATCC 1 cut(s) 694
BclI TGATCA 2 cut(s) 247, 603
BcoDI GTCTC 2 cut(s) 123, 771
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 231, 771
BfrI CTTAAG 1 cut(s) 845
BfuI GTATCC 1 cut(s) 694
BglII AGATCT 1 cut(s) 19
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 18, 401
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 771
BsaJI CCNNGG 2 cut(s) 36, 85
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 544, 683, 814
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 408, 725
Bse8I GATNNNNATC 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 36, 85
BseGI GGATG 2 cut(s) 9, 633
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 37, 544, 683, 814
BseMII CTCAG 2 cut(s) 506, 744
BseNI ACTGG 2 cut(s) 408, 725
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 458, 611
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 317, 759
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 167, 542
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 4 cut(s) 37, 544, 683, 814
BsmAI GTCTC 2 cut(s) 123, 771
BsmFI GGGAC 1 cut(s) 590
BsnI GGCC 2 cut(s) 458, 611
Bso31I GGTCTC 1 cut(s) 771
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 317, 759
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 5 cut(s) 19, 240, 247, 603, 799
BspACI CCGC 4 cut(s) 93, 207, 539, 545
BspANI GGCC 2 cut(s) 458, 611
BspCNI CTCAG 2 cut(s) 505, 745
BspEI TCCGGA 1 cut(s) 166
BspMAI CTGCAG 2 cut(s) 235, 775
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 2 cut(s) 408, 725
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 36, 85
BssMI GATC 5 cut(s) 19, 240, 247, 603, 799
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 161, 423, 763
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 543, 555
BstDEI CTNAG 2 cut(s) 492, 753
BstF5I GGATG 2 cut(s) 9, 633
BstKTI GATC 5 cut(s) 22, 243, 250, 606, 802
BstMAI GTCTC 2 cut(s) 123, 771
BstMBI GATC 5 cut(s) 19, 240, 247, 603, 799
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 455, 598
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 2 cut(s) 231, 771
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 2 cut(s) 458, 611
BtsCI GGATG 2 cut(s) 9, 633
BtsI GCAGTG 4 cut(s) 240, 456, 699, 768
BtsIMutI CAGTG 8 cut(s) 166, 240, 401, 456, 699, 750, 759, 768
Cac8I GCNNGC 2 cut(s) 543, 555
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 60
CviAII CATG 4 cut(s) 115, 223, 360, 607
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 492, 753
DpnI GATC 5 cut(s) 21, 242, 249, 605, 801
DpnII GATC 5 cut(s) 19, 240, 247, 603, 799
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 315, 757
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 317, 759
Eco31I GGTCTC 1 cut(s) 771
Eco32I GATATC 3 cut(s) 130, 178, 357
Eco53kI GAGCTC 2 cut(s) 315, 757
Eco57I CTGAAG 2 cut(s) 69, 611
Eco88I CYCGRG 1 cut(s) 304
EcoICRI GAGCTC 2 cut(s) 315, 757
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 3 cut(s) 130, 178, 357
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 2 cut(s) 317, 759
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 4 cut(s) 118, 226, 363, 610
FaiI YATR 8 cut(s) 116, 224, 301, 361, 483, 608, 731, 798
FaqI GGGAC 1 cut(s) 590
FatI CATG 4 cut(s) 114, 222, 359, 606
FauI CCCGC 1 cut(s) 546
FbaI TGATCA 2 cut(s) 247, 603
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 2 cut(s) 317, 759
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 2 cut(s) 458, 611
HapII CCGG 2 cut(s) 167, 542
HgaI GACGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 4 cut(s) 118, 226, 363, 610
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 2 cut(s) 582, 822
HpaII CCGG 2 cut(s) 167, 542
HphI GGTGA 3 cut(s) 107, 386, 406
Hpy166II GTNNAC 3 cut(s) 111, 440, 718
Hpy188I TCNGA 2 cut(s) 49, 817
Hpy188III TCNNGA 3 cut(s) 167, 306, 835
Hpy8I GTNNAC 3 cut(s) 111, 440, 718
HpyCH4III ACNGT 3 cut(s) 161, 423, 763
HpyCH4IV ACGT 3 cut(s) 614, 651, 828
HpyCH4V TGCA 7 cut(s) 233, 262, 327, 363, 392, 692, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 598
HpyF3I CTNAG 2 cut(s) 492, 753
HpySE526I ACGT 3 cut(s) 614, 651, 828
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 4 cut(s) 118, 226, 363, 610
Kpn2I TCCGGA 1 cut(s) 166
KroI GCCGGC 1 cut(s) 541
KroNI GCCGGC 1 cut(s) 543
Ksp22I TGATCA 2 cut(s) 247, 603
Kzo9I GATC 5 cut(s) 19, 240, 247, 603, 799
LmnI GCTCC 2 cut(s) 136, 850
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 2 cut(s) 18, 401
MaeI CTAG 1 cut(s) 57
MaeII ACGT 3 cut(s) 614, 651, 828
MaeIII GTNAC 1 cut(s) 615
MalI GATC 5 cut(s) 21, 242, 249, 605, 801
MboI GATC 5 cut(s) 19, 240, 247, 603, 799
MboII GAAGA 2 cut(s) 193, 497
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 317, 759
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 7 cut(s) 41, 252, 381, 497, 654, 679, 809
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 1 cut(s) 591
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 31, 91, 566, 715
Mox20I TGGCCA 1 cut(s) 611
MreI CGCCGGCG 1 cut(s) 541
MroI TCCGGA 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 541
MscI TGGCCA 1 cut(s) 611
MseI TTAA 2 cut(s) 711, 846
MslI CAYNNNNRTG 1 cut(s) 364
Msp20I TGGCCA 1 cut(s) 611
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 2 cut(s) 167, 542
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 455, 598
NaeI GCCGGC 1 cut(s) 543
NdeII GATC 5 cut(s) 19, 240, 247, 603, 799
NgoMIV GCCGGC 1 cut(s) 541
NlaIII CATG 4 cut(s) 118, 226, 363, 610
NmeAIII GCCGAG 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 431
PdiI GCCGGC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 822
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
Psp124BI GAGCTC 2 cut(s) 317, 759
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 2 cut(s) 235, 775
PsuI RGATCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 364
SacI GAGCTC 2 cut(s) 317, 759
SaqAI TTAA 2 cut(s) 711, 846
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 5 cut(s) 19, 240, 247, 603, 799
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 591
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 317, 759
SfaNI GCATC 2 cut(s) 18, 401
SfcI CTRYAG 2 cut(s) 231, 771
Sfr274I CTCGAG 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 3 cut(s) 304, 638, 845
SmoI CTYRAG 3 cut(s) 304, 638, 845
Sse9I AATT 7 cut(s) 41, 252, 381, 497, 654, 679, 809
SsiI CCGC 4 cut(s) 93, 207, 539, 545
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 2 cut(s) 317, 759
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 161, 423, 763
TaiI ACGT 3 cut(s) 617, 654, 831
TaqI TCGA 3 cut(s) 305, 317, 425
TaqII GACCGA 1 cut(s) 83
TasI AATT 7 cut(s) 41, 252, 381, 497, 654, 679, 809
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 2 cut(s) 711, 846
Tru9I TTAA 2 cut(s) 711, 846
TscAI CASTG 8 cut(s) 166, 240, 408, 456, 699, 757, 766, 775
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 182, 275, 393, 498
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 8 cut(s) 166, 240, 408, 456, 699, 757, 766, 775
Tth111I GACNNNGTC 1 cut(s) 581
Vha464I CTTAAG 1 cut(s) 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.