FvH4_4g02480

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000511
Physical Location & Seq
Forward (+)
2278412 .. 2283019
4608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02480.t1

Sequence Viewer

Length: 2034 bp
ATGCTAGGCATAGCACAAAATACGGTGAGCAAGGTGACCTCAACTGTCACCAACATTGAGGGTGAGCTCGGCTTGTTCACCATGTCTGACCACAAAATCTTAGAGCTCATTTACACCAGCCATGTCCATGAGGACGACTCCTTTGACGTCGATTCTCTTTTCTTGATCACCGAAAACATCATCAAGCGTTCTACCCAGATCGTCGATAACATCGTGCAGGGAACCCAGGTTCATGTTGAAACCATAGATGAGATGCCCCCAAAAGCCAGCTTCAGCTCCCCATTGTGTACCCTCAAATCAATTGGTTGTGAGCTATCTTGCAAGGCTCCAGGTGACGAGATTGCCCACAAATCAACACTTTCAATACTCAACAAGCTATCGACCTATTCCTGGGAAGCCAAGGCAGTCTTGGCCTTAGCTGCCTTTGCTTTGGAATATGGTGAGTTCTGGCTCCTTGCCCAAATCCATCAATCTGACCCGCTTGCGAAGTCTGTCGCAATCCTTAAGCGAGTGCCCGTCCTTCTCAAGCCCGCTGACCTCCAGAAACGGCGCCAGGCAGTGGTTGAGCTTAACACTCTGATCAAGACTACATTGCAAGTGATCGAGTGCATGTTTGAGCTGGAGAAGCTTTCTACTTATGATCCAAAGGATGTGCCTGCATTGGCCATTGCAATGGACCATATCCCAGTTGATGTCTACTGGTCTATCATAACCATTGTTGCTTGTGCTACTAAAGTCACCCTTCTCACCAGTGATGAGGACAAACCACACGATTTATCCCAATATTCTCAAAAGATCCATTACATCCTAAACAAGCTTAAGATCCAGCTGATAATCTGCAAGAAACAAATAGAGGAGGCAGAGACCTATAGGAAGCTGAGGAAACTTTTTCAGACCCCTACCGAAGTTATGGAGGTGTTCAAGGCCCTGATTTTCACCAAGGATACAGTGCAGCCAATCATTGATGGTTCGACTAACAAAACGGTTACCATTGATGTGCTGAGGAGGAAGTATGTGTTGTTGTTCATTTCAAGCCTTGACATTTCTGATGATGACATTGCAATTCTCAAACCAGTTTATGAGGGAATAAAGAAAGAAGATAAGTACAAGATTGTGTGGATTCCCATTGTGGAGCAATGGACTGATGAGCTACGAAAGAAGTTTGAGATCTTGAGGACTAAGATGCCATGGTACACAGTGCAGTATTTTTCACCAGTTGCAGGCATCAGGTTTATCAAGGAAGAGTGGCACTTCAAGGGTAAGCCTGCAGTGGTGGTAATGAACCCACAAGGCAAAGTAGAAAACACCAATGCTCTCCACTTGATTCGAATTTATGGAATGAAGGCATTTCCTTTCCATAAGGGCATAGAAGACACTTTTACTAGTGACAAAGAGTGGATCACCCCCATTGTGAATGATATTCACCCAACCATTCAGACATGGATCAAGGAGGAGAAGTACATTTTCTTCTATGGAGGCAAGGACAATGAATGGATCCAGCAATTCACAAAGAAAGCAACTGCCATTGCAAATGATCCTTTTATTAAGGAACTTAAGATCAACATTGAGCTGTTTTGTGTTGGTAAGAGCGCAAAAGGAGGTGAAGACCTTGGGATTCTCGGACGTTTCTGGAGCGGCATTGAGAGCTTGTTCTTCACCAATGTCAACAAGCAAACGGACACTGTCACCAAAGAAGTCCAGAAGCTACTTTCCTATAAAAATGAGAGTGGATGGGCCGTGCTTAGCAAAGGGTCTACTGTGGTGGTCAGTGGTCACGGCTTCACAATCTTGAAGGTGCTCGAGGACTTTGAGAGATGGAAGGAGCTTATCAAGGAAAAGGGCTTTGAGGTCTCATTCAAATCGTACCACGATAAGGTGATTCAGACCATGAAGCACTGTGTCCGCCTTGACATTCCAAGTGTTGCAGGAAAGGTTCCGGAGACAATGAAGTGTCCCGAGTGTCCTCGCACCATGGAGACCTATGTGAGCTACAAGTGTTGCCACACTGATGGTCCTATTAACGCGCATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

678

Amino Acids

77.17

Weight (kDa)

6.84

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 29 - 300 4.4e-88 Sieve element occlusion N-terminus
SEO_C PF14577 468 - 532 2.1e-14 Sieve element occlusion C-terminus
SEO_C PF14577 542 - 668 5.2e-35 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 559
AccBSI CCGCTC 1 cut(s) 1635
AccI GTMKAC 2 cut(s) 696, 1754
AccII CGCG 1 cut(s) 2024
AccIII TCCGGA 1 cut(s) 1936
AciI CCGC 4 cut(s) 479, 531, 1635, 1903
AclWI GGATC 8 cut(s) 635, 790, 817, 1406, 1451, 1489, 1502, 1529
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 1329
AcuI CTGAAG 1 cut(s) 256
AcyI GRCGYC 2 cut(s) 147, 550
AfaI GTAC 5 cut(s) 289, 1106, 1193, 1460, 1865
AfiI CCNNNNNNNGG 4 cut(s) 390, 559, 1220, 1873
AflII CTTAAG 3 cut(s) 503, 818, 1553
AgsI TTSAA 7 cut(s) 239, 363, 922, 1032, 1255, 1792, 1858
AhlI ACTAGT 1 cut(s) 1382
AjnI CCWGG 4 cut(s) 225, 328, 389, 552
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
Alw21I GWGCWC 3 cut(s) 69, 108, 1800
Alw26I GTCTC 4 cut(s) 857, 1855, 1934, 1970
AlwI GGATC 8 cut(s) 635, 790, 817, 1406, 1451, 1489, 1502, 1529
Ama87I CYCGRG 2 cut(s) 1799, 1955
Aor13HI TCCGGA 1 cut(s) 1936
AoxI GGCC 4 cut(s) 411, 663, 924, 1734
ApeKI GCWGC 2 cut(s) 419, 952
ApoI RAATTY 1 cut(s) 1329
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 3 cut(s) 552, 1592, 2026
AspS9I GGNCC 4 cut(s) 676, 925, 1734, 2012
AsuII TTCGAA 1 cut(s) 1327
AvaI CYCGRG 2 cut(s) 1799, 1955
AvaII GGWCC 2 cut(s) 676, 2012
BaeGI GKGCMC 1 cut(s) 516
BalI TGGCCA 1 cut(s) 665
BamHI GGATCC 1 cut(s) 1494
BanI GGYRCC 1 cut(s) 549
BanII GRGCYC 2 cut(s) 69, 108
BarI GAAGNNNNNNTAC 2 cut(s) 1451, 1483
BbsI GAAGAC 2 cut(s) 1377, 1611
Bbv12I GWGCWC 3 cut(s) 69, 108, 1800
BbvCI CCTCAGC 2 cut(s) 878, 1001
BbvI GCAGC 2 cut(s) 406, 964
BccI CCATC 5 cut(s) 474, 959, 1725, 1809, 2003
BceAI ACGGC 3 cut(s) 563, 1721, 1792
BciT130I CCWGG 4 cut(s) 227, 330, 391, 554
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 2 cut(s) 165, 579
BcoDI GTCTC 4 cut(s) 857, 1855, 1934, 1970
BcuI ACTAGT 1 cut(s) 1382
BfaI CTAG 2 cut(s) 5, 1383
BfmI CTRYAG 2 cut(s) 868, 1266
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 3 cut(s) 503, 818, 1553
BfuI GTATCC 1 cut(s) 937
BglII AGATCT 1 cut(s) 1167
BisI GCNGC 3 cut(s) 420, 953, 1636
BlpI GCTNAGC 1 cut(s) 1742
BlsI GCNGC 3 cut(s) 421, 954, 1637
Bme1390I CCNGG 4 cut(s) 227, 330, 391, 554
Bme18I GGWCC 2 cut(s) 676, 2012
BmeT110I CYCGRG 2 cut(s) 1799, 1955
BmgT120I GGNCC 4 cut(s) 676, 925, 1734, 2012
BmiI GGNNCC 6 cut(s) 223, 327, 452, 551, 1496, 1935
BmrFI CCNGG 4 cut(s) 227, 330, 391, 554
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 243, 1173, 1233
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 1377, 1611
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 4 cut(s) 312, 524, 641, 1651
Bpu10I CCTNAGC 3 cut(s) 415, 878, 1001
Bpu1102I GCTNAGC 1 cut(s) 1742
Bpu14I TTCGAA 1 cut(s) 1327
BpuEI CTTGAG 2 cut(s) 509, 1192
BsaHI GRCGYC 2 cut(s) 147, 550
BsaI GGTCTC 3 cut(s) 857, 1855, 1970
BsaJI CCNNGG 7 cut(s) 225, 390, 399, 939, 1187, 1609, 1971
BsaWI WCCGGW 1 cut(s) 1936
BsaXI ACNNNNNCTCC 2 cut(s) 1442, 1472
Bsc4I CCNNNNNNNGG 4 cut(s) 390, 559, 1220, 1873
Bse1I ACTGG 5 cut(s) 686, 704, 750, 1073, 1214
Bse3DI GCAATG 6 cut(s) 590, 666, 678, 1056, 1142, 1524
BseAI TCCGGA 1 cut(s) 1936
BseBI CCWGG 4 cut(s) 227, 330, 391, 554
BseDI CCNNGG 7 cut(s) 225, 390, 399, 939, 1187, 1609, 1971
BseGI GGATG 3 cut(s) 655, 804, 1736
BseLI CCNNNNNNNGG 4 cut(s) 390, 559, 1220, 1873
BseMI GCAATG 6 cut(s) 590, 666, 678, 1056, 1142, 1524
BseMII CTCAG 2 cut(s) 869, 992
BseNI ACTGG 5 cut(s) 686, 704, 750, 1073, 1214
BseRI GAGGAG 3 cut(s) 869, 1018, 1466
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 2 cut(s) 406, 964
BsgI GTGCAG 3 cut(s) 236, 971, 1220
Bsh1236I CGCG 1 cut(s) 2024
BshFI GGCC 4 cut(s) 413, 665, 926, 1736
BshNI GGYRCC 1 cut(s) 549
BsiHKAI GWGCWC 3 cut(s) 69, 108, 1800
BsiHKCI CYCGRG 2 cut(s) 1799, 1955
BsiSI CCGG 1 cut(s) 1937
BslFI GGGAC 1 cut(s) 1938
BslI CCNNNNNNNGG 4 cut(s) 390, 559, 1220, 1873
BsmAI GTCTC 4 cut(s) 857, 1855, 1934, 1970
BsmFI GGGAC 1 cut(s) 1938
BsnI GGCC 4 cut(s) 413, 665, 926, 1736
Bso31I GGTCTC 3 cut(s) 857, 1855, 1970
BsoBI CYCGRG 2 cut(s) 1799, 1955
Bsp119I TTCGAA 1 cut(s) 1327
Bsp1286I GDGCHC 4 cut(s) 69, 108, 516, 1800
Bsp13I TCCGGA 1 cut(s) 1936
Bsp1720I GCTNAGC 1 cut(s) 1742
Bsp19I CCATGG 2 cut(s) 1187, 1971
BspACI CCGC 4 cut(s) 479, 531, 1635, 1903
BspANI GGCC 4 cut(s) 413, 665, 926, 1736
BspCNI CTCAG 2 cut(s) 870, 993
BspEI TCCGGA 1 cut(s) 1936
BspFNI CGCG 1 cut(s) 2024
BspLI GGNNCC 6 cut(s) 223, 327, 452, 551, 1496, 1935
BspMAI CTGCAG 1 cut(s) 1270
BspPI GGATC 8 cut(s) 635, 790, 817, 1406, 1451, 1489, 1502, 1529
BspT104I TTCGAA 1 cut(s) 1327
BspT107I GGYRCC 1 cut(s) 549
BspTI CTTAAG 3 cut(s) 503, 818, 1553
BspTNI GGTCTC 3 cut(s) 857, 1855, 1970
BsrBI CCGCTC 1 cut(s) 1635
BsrDI GCAATG 6 cut(s) 590, 666, 678, 1056, 1142, 1524
BsrI ACTGG 5 cut(s) 686, 704, 750, 1073, 1214
BssECI CCNNGG 7 cut(s) 225, 390, 399, 939, 1187, 1609, 1971
BssNI GRCGYC 2 cut(s) 147, 550
BssT1I CCWWGG 5 cut(s) 399, 939, 1187, 1609, 1971
Bst2UI CCWGG 4 cut(s) 227, 330, 391, 554
Bst4CI ACNGT 8 cut(s) 25, 46, 949, 985, 1198, 1684, 1759, 1898
Bst6I CTCTTC 1 cut(s) 1236
BstACI GRCGYC 2 cut(s) 147, 550
BstAFI CTTAAG 3 cut(s) 503, 818, 1553
BstBI TTCGAA 1 cut(s) 1327
BstC8I GCNNGC 6 cut(s) 268, 483, 531, 657, 1222, 1266
BstDEI CTNAG 6 cut(s) 100, 415, 878, 1001, 1179, 1742
BstDSI CCRYGG 2 cut(s) 1187, 1971
BstEII GGTNACC 2 cut(s) 34, 985
BstF5I GGATG 3 cut(s) 655, 804, 1736
BstFNI CGCG 1 cut(s) 2024
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 3 cut(s) 552, 1592, 2026
BstMAI GTCTC 4 cut(s) 857, 1855, 1934, 1970
BstMWI GCNNNNNNNGC 5 cut(s) 410, 419, 425, 625, 1644
BstNI CCWGG 4 cut(s) 227, 330, 391, 554
BstNSI RCATGY 1 cut(s) 613
BstPI GGTNACC 2 cut(s) 34, 985
BstSCI CCNGG 4 cut(s) 225, 328, 389, 552
BstSFI CTRYAG 2 cut(s) 868, 1266
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 1 cut(s) 2024
BstV1I GCAGC 2 cut(s) 406, 964
BstV2I GAAGAC 2 cut(s) 1377, 1611
BstX2I RGATCY 4 cut(s) 795, 822, 1167, 1494
BstXI CCANNNNNNTGG 2 cut(s) 673, 2009
BstYI RGATCY 4 cut(s) 795, 822, 1167, 1494
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 4 cut(s) 413, 665, 926, 1736
BtgI CCRYGG 2 cut(s) 1187, 1971
BtsCI GGATG 3 cut(s) 655, 804, 1736
BtsI GCAGTG 2 cut(s) 564, 1275
BtsIMutI CAGTG 9 cut(s) 564, 757, 954, 1203, 1275, 1680, 1774, 1894, 2004
Cac8I GCNNGC 6 cut(s) 268, 483, 531, 657, 1222, 1266
CfoI GCGC 3 cut(s) 552, 1592, 2026
Cfr13I GGNCC 4 cut(s) 676, 925, 1734, 2012
Csp6I GTAC 5 cut(s) 288, 1105, 1192, 1459, 1864
CviAII CATG 9 cut(s) 82, 122, 128, 233, 610, 1188, 1440, 1888, 1972
CviQI GTAC 5 cut(s) 288, 1105, 1192, 1459, 1864
DdeI CTNAG 6 cut(s) 100, 415, 878, 1001, 1179, 1742
DinI GGCGCC 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
EciI GGCGGA 1 cut(s) 1892
Ecl136II GAGCTC 2 cut(s) 67, 106
Eco130I CCWWGG 5 cut(s) 399, 939, 1187, 1609, 1971
Eco24I GRGCYC 2 cut(s) 69, 108
Eco31I GGTCTC 3 cut(s) 857, 1855, 1970
Eco47I GGWCC 2 cut(s) 676, 2012
Eco53kI GAGCTC 2 cut(s) 67, 106
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 1799, 1955
Eco91I GGTNACC 2 cut(s) 34, 985
EcoICRI GAGCTC 2 cut(s) 67, 106
EcoO109I RGGNCCY 1 cut(s) 925
EcoO65I GGTNACC 2 cut(s) 34, 985
EcoRII CCWGG 4 cut(s) 225, 328, 389, 552
EcoT14I CCWWGG 5 cut(s) 399, 939, 1187, 1609, 1971
EcoT38I GRGCYC 2 cut(s) 69, 108
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
ErhI CCWWGG 5 cut(s) 399, 939, 1187, 1609, 1971
FaeI CATG 9 cut(s) 85, 125, 131, 236, 613, 1191, 1443, 1891, 1975
FalI AAGNNNNNCTT 4 cut(s) 392, 424, 726, 758
FaqI GGGAC 1 cut(s) 1938
FatI CATG 9 cut(s) 81, 121, 127, 232, 609, 1187, 1439, 1887, 1971
FauI CCCGC 2 cut(s) 486, 538
FbaI TGATCA 2 cut(s) 165, 579
FblI GTMKAC 2 cut(s) 696, 1754
Fnu4HI GCNGC 3 cut(s) 420, 953, 1636
FokI GGATG 3 cut(s) 662, 791, 1743
FriOI GRGCYC 2 cut(s) 69, 108
Fsp4HI GCNGC 3 cut(s) 420, 953, 1636
FspBI CTAG 2 cut(s) 5, 1383
GlaI GCGC 3 cut(s) 551, 1591, 2025
GluI GCNGC 3 cut(s) 420, 953, 1636
GsuI CTGGAG 4 cut(s) 312, 524, 641, 1651
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 4 cut(s) 413, 665, 926, 1736
HapII CCGG 1 cut(s) 1937
HhaI GCGC 3 cut(s) 552, 1592, 2026
Hin1I GRCGYC 2 cut(s) 147, 550
Hin1II CATG 9 cut(s) 85, 125, 131, 236, 613, 1191, 1443, 1891, 1975
Hin6I GCGC 3 cut(s) 550, 1590, 2024
HinP1I GCGC 3 cut(s) 550, 1590, 2024
HincII GTYRAC 1 cut(s) 1666
HindII GTYRAC 1 cut(s) 1666
HindIII AAGCTT 2 cut(s) 626, 815
HinfI GANTC 6 cut(s) 137, 152, 1120, 1324, 1615, 1879
HpaII CCGG 1 cut(s) 1937
Hpy166II GTNNAC 6 cut(s) 78, 288, 697, 1194, 1666, 1755
Hpy188I TCNGA 8 cut(s) 88, 475, 579, 894, 1048, 1437, 1622, 1884
Hpy188III TCNNGA 9 cut(s) 163, 541, 583, 1171, 1630, 1699, 1789, 1937, 1955
Hpy8I GTNNAC 6 cut(s) 78, 288, 697, 1194, 1666, 1755
Hpy99I CGWCG 2 cut(s) 152, 206
HpyAV CCTTC 5 cut(s) 530, 752, 1336, 1786, 1813
HpyCH4III ACNGT 8 cut(s) 25, 46, 949, 985, 1198, 1684, 1759, 1898
HpyCH4IV ACGT 2 cut(s) 147, 1624
HpyF10VI GCNNNNNNNGC 5 cut(s) 410, 419, 425, 625, 1644
HpyF3I CTNAG 6 cut(s) 100, 415, 878, 1001, 1179, 1742
HpySE526I ACGT 2 cut(s) 147, 1624
Hsp92I GRCGYC 2 cut(s) 147, 550
Hsp92II CATG 9 cut(s) 85, 125, 131, 236, 613, 1191, 1443, 1891, 1975
HspAI GCGC 3 cut(s) 550, 1590, 2024
KasI GGCGCC 1 cut(s) 549
Kpn2I TCCGGA 1 cut(s) 1936
Ksp22I TGATCA 2 cut(s) 165, 579
LmnI GCTCC 6 cut(s) 281, 331, 456, 1132, 1632, 1822
Lsp1109I GCAGC 2 cut(s) 406, 964
LweI GCATC 3 cut(s) 243, 1173, 1233
MaeI CTAG 2 cut(s) 5, 1383
MaeII ACGT 2 cut(s) 147, 1624
MaeIII GTNAC 8 cut(s) 34, 46, 332, 736, 985, 1385, 1684, 1772
MbiI CCGCTC 1 cut(s) 1635
MboII GAAGA 6 cut(s) 1109, 1253, 1382, 1459, 1616, 1645
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 4 cut(s) 795, 822, 1167, 1494
MhlI GDGCHC 4 cut(s) 69, 108, 516, 1800
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 4 cut(s) 300, 1062, 1329, 1502
MluNI TGGCCA 1 cut(s) 665
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 1 cut(s) 131
Mox20I TGGCCA 1 cut(s) 665
MroI TCCGGA 1 cut(s) 1936
MscI TGGCCA 1 cut(s) 665
MseI TTAA 6 cut(s) 504, 570, 819, 1545, 1554, 2019
MslI CAYNNNNRTG 4 cut(s) 126, 671, 995, 2007
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 2 cut(s) 533, 829
MspCI CTTAAG 3 cut(s) 503, 818, 1553
MspI CCGG 1 cut(s) 1937
MspR9I CCNGG 4 cut(s) 227, 330, 391, 554
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 4 cut(s) 227, 330, 391, 554
MvnI CGCG 1 cut(s) 2024
MwoI GCNNNNNNNGC 5 cut(s) 410, 419, 425, 625, 1644
NarI GGCGCC 1 cut(s) 550
NcoI CCATGG 2 cut(s) 1187, 1971
NlaIII CATG 9 cut(s) 85, 125, 131, 236, 613, 1191, 1443, 1891, 1975
NlaIV GGNNCC 6 cut(s) 223, 327, 452, 551, 1496, 1935
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 7 cut(s) 34, 46, 332, 736, 1385, 1684, 1772
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 1327
PaeR7I CTCGAG 1 cut(s) 1799
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 5 cut(s) 152, 1120, 1324, 1615, 1879
PflFI GACNNNGTC 1 cut(s) 1682
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 3 cut(s) 421, 954, 1637
PleI GAGTC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 69, 108
Psp6I CCWGG 4 cut(s) 225, 328, 389, 552
PspEI GGTNACC 2 cut(s) 34, 985
PspGI CCWGG 4 cut(s) 225, 328, 389, 552
PspN4I GGNNCC 6 cut(s) 223, 327, 452, 551, 1496, 1935
PspPI GGNCC 4 cut(s) 676, 925, 1734, 2012
PspXI VCTCGAGB 1 cut(s) 1799
PstI CTGCAG 1 cut(s) 1270
PsuI RGATCY 4 cut(s) 795, 822, 1167, 1494
PsyI GACNNNGTC 1 cut(s) 1682
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 5 cut(s) 289, 1106, 1193, 1460, 1865
RsaNI GTAC 5 cut(s) 288, 1105, 1192, 1459, 1864
RseI CAYNNNNRTG 4 cut(s) 126, 671, 995, 2007
SacI GAGCTC 2 cut(s) 69, 108
SaqAI TTAA 6 cut(s) 504, 570, 819, 1545, 1554, 2019
SatI GCNGC 3 cut(s) 420, 953, 1636
Sau96I GGNCC 4 cut(s) 676, 925, 1734, 2012
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 4 cut(s) 227, 330, 391, 554
SduI GDGCHC 4 cut(s) 69, 108, 516, 1800
SfaNI GCATC 3 cut(s) 243, 1173, 1233
SfcI CTRYAG 2 cut(s) 868, 1266
SfoI GGCGCC 1 cut(s) 551
Sfr274I CTCGAG 1 cut(s) 1799
SfuI TTCGAA 1 cut(s) 1327
SinI GGWCC 2 cut(s) 676, 2012
SlaI CTCGAG 1 cut(s) 1799
SmiMI CAYNNNNRTG 4 cut(s) 126, 671, 995, 2007
SmlI CTYRAG 6 cut(s) 503, 524, 818, 1171, 1553, 1799
SmoI CTYRAG 6 cut(s) 503, 524, 818, 1171, 1553, 1799
SpeI ACTAGT 1 cut(s) 1382
Sse9I AATT 4 cut(s) 300, 1062, 1329, 1502
SsiI CCGC 4 cut(s) 479, 531, 1635, 1903
SspDI GGCGCC 1 cut(s) 549
SspI AATATT 1 cut(s) 785
SspMI CTAG 2 cut(s) 5, 1383
SstI GAGCTC 2 cut(s) 69, 108
StyD4I CCNGG 4 cut(s) 225, 328, 389, 552
StyI CCWWGG 5 cut(s) 399, 939, 1187, 1609, 1971
TaaI ACNGT 8 cut(s) 25, 46, 949, 985, 1198, 1684, 1759, 1898
TaiI ACGT 2 cut(s) 150, 1627
TaqI TCGA 7 cut(s) 150, 204, 380, 603, 971, 1327, 1800
TasI AATT 4 cut(s) 300, 1062, 1329, 1502
TatI WGTACW 2 cut(s) 1104, 1458
TauI GCSGC 1 cut(s) 1638
TfiI GAWTC 5 cut(s) 152, 1120, 1324, 1615, 1879
Tru1I TTAA 6 cut(s) 504, 570, 819, 1545, 1554, 2019
Tru9I TTAA 6 cut(s) 504, 570, 819, 1545, 1554, 2019
TscAI CASTG 9 cut(s) 564, 757, 954, 1203, 1275, 1687, 1774, 1901, 2011
TseFI GTSAC 7 cut(s) 34, 46, 332, 736, 1385, 1684, 1772
TseI GCWGC 2 cut(s) 419, 952
Tsp45I GTSAC 7 cut(s) 34, 46, 332, 736, 1385, 1684, 1772
TspDTI ATGAA 7 cut(s) 221, 1015, 1295, 1355, 1503, 1904, 1961
TspGWI ACGGA 1 cut(s) 1691
TspRI CASTG 9 cut(s) 564, 757, 954, 1203, 1275, 1687, 1774, 1901, 2011
Tth111I GACNNNGTC 1 cut(s) 1682
Van91I CCANNNNNTGG 1 cut(s) 559
Vha464I CTTAAG 3 cut(s) 503, 818, 1553
VpaK11BI GGWCC 2 cut(s) 676, 2012
XapI RAATTY 1 cut(s) 1329
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 1799
XmiI GTMKAC 2 cut(s) 696, 1754
XspI CTAG 2 cut(s) 5, 1383
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.