Rmu_sc0002083.1_g000025

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002083.1
OG0000511
Physical Location & Seq
Reverse (-)
114354 .. 114959
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002083.1_g000025.1.cds

Sequence Viewer

Length: 606 bp
atggcaatcaaacagatcaaagaggataagtacatcttcttctatggcggtaaagacaacgaatggattcagcaattcacaaagaaagcgactgcccttgcaaatgatccaatcttcaaggaagcagagattcacccagagttggtatgcattggaaaaggcagcaaaggagaagatgaccatgacggtctaggccgcttctggaccagtgtagagagcctattcttcaccaaagaccacaagcaggtcgactcagtcagtcaagaaatccagaagcttctctcttacaaaaatgagaatggatgggccgtgcttagcaaagggtcgactgtgttggtcacaggtcatggtgtctcgatgttgaagttggtagaggactttgagaaatggaaggaccatgtcaaagtggtagaggactttgagttttgtttcaaggcctattatgggaagattagtgaggctagtcgaccgtgctgccgtctggacattccggggtctaacagaaaggttctagagaagatgaagtgccctgattgccaccgtagtatggagacttttatcagttacaagtgttgccacattgatggtcctgctgcacatcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

201

Amino Acids

22.99

Weight (kDa)

6.75

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccI GTMKAC 3 cut(s) 249, 326, 466
AciI CCGC 2 cut(s) 48, 196
AclWI GGATC 1 cut(s) 101
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 4 cut(s) 142, 244, 444, 547
AgsI TTSAA 3 cut(s) 118, 364, 433
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 358, 545
AlwI GGATC 1 cut(s) 101
AoxI GGCC 3 cut(s) 193, 306, 435
ApeKI GCWGC 3 cut(s) 162, 474, 593
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 4 cut(s) 204, 306, 394, 587
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 125, 220
AvaII GGWCC 3 cut(s) 204, 394, 587
BaeGI GKGCMC 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbvI GCAGC 3 cut(s) 174, 461, 580
BccI CCATC 2 cut(s) 297, 578
BceAI ACGGC 2 cut(s) 293, 462
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 358, 545
BfaI CTAG 3 cut(s) 191, 462, 512
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 163, 196, 475, 594
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 4 cut(s) 164, 197, 476, 595
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 3 cut(s) 204, 394, 587
BmgT120I GGNCC 4 cut(s) 204, 306, 394, 587
BmrFI CCNGG 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 244, 444, 547
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 4 cut(s) 142, 244, 444, 547
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 3 cut(s) 174, 461, 580
BsgI GTGCAG 1 cut(s) 579
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 3 cut(s) 195, 308, 437
BsiEI CGRYCG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 491
BslI CCNNNNNNNGG 4 cut(s) 142, 244, 444, 547
BsmAI GTCTC 2 cut(s) 358, 545
BsnI GGCC 3 cut(s) 195, 308, 437
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 15, 106
Bsp1720I GCTNAGC 1 cut(s) 314
BspACI CCGC 2 cut(s) 48, 196
BspANI GGCC 3 cut(s) 195, 308, 437
BspCNI CTCAG 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 15, 106
Bst4CI ACNGT 4 cut(s) 188, 331, 471, 542
BstDEI CTNAG 2 cut(s) 253, 314
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 2 cut(s) 18, 109
BstMAI GTCTC 2 cut(s) 358, 545
BstMBI GATC 2 cut(s) 15, 106
BstMCI CGRYCG 1 cut(s) 470
BstMWI GCNNNNNNNGC 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 490
BstSLI GKGCMC 1 cut(s) 530
BstV1I GCAGC 3 cut(s) 174, 461, 580
BstXI CCANNNNNNTGG 1 cut(s) 584
BsuRI GGCC 3 cut(s) 195, 308, 437
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 204, 306, 394, 587
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 182, 347, 398
CviJI RGCY 6 cut(s) 195, 219, 277, 308, 437, 461
CviKI_1 RGCY 6 cut(s) 195, 219, 277, 308, 437, 461
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 253, 314
DpnI GATC 2 cut(s) 17, 108
DpnII GATC 2 cut(s) 15, 106
Eco147I AGGCCT 1 cut(s) 437
Eco47I GGWCC 3 cut(s) 204, 394, 587
EcoT22I ATGCAT 1 cut(s) 152
FaeI CATG 3 cut(s) 185, 350, 401
FaiI YATR 7 cut(s) 45, 148, 183, 348, 399, 444, 548
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 3 cut(s) 181, 346, 397
FblI GTMKAC 3 cut(s) 249, 326, 466
Fnu4HI GCNGC 4 cut(s) 163, 196, 475, 594
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 4 cut(s) 163, 196, 475, 594
FspBI CTAG 3 cut(s) 191, 462, 512
GluI GCNGC 4 cut(s) 163, 196, 475, 594
HaeIII GGCC 3 cut(s) 195, 308, 437
HapII CCGG 1 cut(s) 491
Hin1II CATG 3 cut(s) 185, 350, 401
HincII GTYRAC 3 cut(s) 250, 327, 467
HindII GTYRAC 3 cut(s) 250, 327, 467
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 67, 130, 251
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 125, 220
Hpy166II GTNNAC 3 cut(s) 250, 327, 467
Hpy188III TCNNGA 6 cut(s) 202, 263, 271, 355, 482, 512
Hpy8I GTNNAC 3 cut(s) 250, 327, 467
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 4 cut(s) 188, 331, 471, 542
HpyCH4V TGCA 3 cut(s) 101, 150, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 534
HpyF3I CTNAG 2 cut(s) 253, 314
Hsp92II CATG 3 cut(s) 185, 350, 401
Kzo9I GATC 2 cut(s) 15, 106
LpnPI CCDG 9 cut(s) 150, 187, 220, 230, 284, 327, 467, 504, 543
Lsp1109I GCAGC 3 cut(s) 174, 461, 580
MaeI CTAG 3 cut(s) 191, 462, 512
MaeIII GTNAC 2 cut(s) 337, 563
MalI GATC 2 cut(s) 17, 108
MboI GATC 2 cut(s) 15, 106
MboII GAAGA 7 cut(s) 28, 31, 106, 185, 217, 460, 529
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 16, 367, 406, 451
Mph1103I ATGCAT 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 604
MslI CAYNNNNRTG 1 cut(s) 582
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 534
NciI CCSGG 1 cut(s) 492
NdeII GATC 2 cut(s) 15, 106
NlaIII CATG 3 cut(s) 185, 350, 401
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 152
PceI AGGCCT 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 67, 130
PflFI GACNNNGTC 2 cut(s) 254, 398
PkrI GCNGC 4 cut(s) 164, 197, 476, 595
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PspPI GGNCC 4 cut(s) 204, 306, 394, 587
PsyI GACNNNGTC 2 cut(s) 254, 398
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 582
SalI GTCGAC 3 cut(s) 248, 325, 465
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 4 cut(s) 163, 196, 475, 594
Sau3AI GATC 2 cut(s) 15, 106
Sau96I GGNCC 4 cut(s) 204, 306, 394, 587
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 530
SetI ASST 4 cut(s) 249, 279, 346, 510
SinI GGWCC 3 cut(s) 204, 394, 587
SmiMI CAYNNNNRTG 1 cut(s) 582
Sse9I AATT 1 cut(s) 74
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 2 cut(s) 48, 196
SspMI CTAG 3 cut(s) 191, 462, 512
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 4 cut(s) 188, 331, 471, 542
TaqI TCGA 4 cut(s) 249, 326, 356, 466
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 30
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 2 cut(s) 67, 130
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 162, 474, 593
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 2 cut(s) 254, 398
VpaK11BI GGWCC 3 cut(s) 204, 394, 587
XbaI TCTAGA 1 cut(s) 511
XmiI GTMKAC 3 cut(s) 249, 326, 466
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 3 cut(s) 191, 462, 512
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.