MD13G1205900.v1.1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000511
Physical Location & Seq
Forward (+)
18659915 .. 18661199
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1205900.v1.1.491

Sequence Viewer

Length: 753 bp
ATGAACCCACAAGGAAAGGTCGAACATCCCAACGCTCTCCACATGATTAGGGTTTGGGGAGTCAATGCTTTCCCTTTCACAAAGGCAACTGAAGAAGAGCTCTCACATGGTCACGGAGATAAATGGATTGGCACTGTTGTCCAAGGGGTTAGCCAATCTGTTACGATCAAAGAGGACAAGTACATTTTCTTCTATGGTGGCAAAGACAATGGTTGGATTCAAGAGTTCACAAAGAAAGCAACTGCCCTTGCAAATGATCCCATCTTCAAGGAGGCAAAGATTCACATCGAGTTGTTCTGCGTGGGAAAAGGAAGCAAGGGAGAAGATGACCATGGCATCCTCGGGAAGTTCTGGACTGGCATCGAAAGCTTGTTCTTCACCAAGGTTCACAGGCCAGCCGACCAAGTCGGTCAAGAAGTCCAGAAGCTACTTTCTTACAAAAACGAAAGTGGATGGGCTGTGCTCAGCAAAGGGCATTCTGTGGTGCTCACCGGCCACGGTGTCTCGATCTTGAGGGTGGTAGAGGACTTTGACAAATGGAAGGACCATGTGAAAGAGAGGGGCTTTGAGTTTTGCTTCAAGTCATACCATGAGAGGGTTCGCACTGTGAGTCGACCTTGCTGCCGCCTTGATATTCCGGGCTCTACCGGGAAGGTTCCAGACACCATGAAGTGTCCTGATTGCCACCGGAGCATGGAGACTTTCATCAGTTACAAGTGTTGCCACATTGATGGTCCTACTGCACATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

251

Amino Acids

28.23

Weight (kDa)

8.08

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_C PF14577 51 - 109 5.6e-09 Sieve element occlusion C-terminus
SEO_C PF14577 117 - 242 2.9e-34 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 613
AciI CCGC 1 cut(s) 625
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 595, 694
AgsI TTSAA 3 cut(s) 221, 268, 580
AluBI AGCT 3 cut(s) 100, 369, 427
AluI AGCT 3 cut(s) 100, 369, 427
Alw21I GWGCWC 3 cut(s) 102, 465, 489
Alw26I GTCTC 2 cut(s) 508, 692
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 392, 493
ApeKI GCWGC 1 cut(s) 621
AspS9I GGNCC 2 cut(s) 544, 734
AsuC2I CCSGG 2 cut(s) 639, 649
AsuHPI GGTGA 2 cut(s) 370, 481
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 544, 734
BanII GRGCYC 2 cut(s) 102, 644
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
Bbv12I GWGCWC 3 cut(s) 102, 465, 489
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 269, 447, 725
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BcnI CCSGG 2 cut(s) 639, 649
BcoDI GTCTC 2 cut(s) 508, 692
BisI GCNGC 2 cut(s) 622, 625
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 2 cut(s) 623, 626
Bme1390I CCNGG 2 cut(s) 639, 649
Bme18I GGWCC 2 cut(s) 544, 734
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 544, 734
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 2 cut(s) 639, 649
BmsI GCATC 2 cut(s) 345, 369
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 532
BpuMI CCSGG 2 cut(s) 639, 649
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 5 cut(s) 142, 331, 340, 381, 496
BsaWI WCCGGW 1 cut(s) 687
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 694
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 284
BseDI CCNNGG 5 cut(s) 142, 331, 340, 381, 496
BseGI GGATG 3 cut(s) 25, 336, 458
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 595, 694
BseMII CTCAG 1 cut(s) 478
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 726
BshFI GGCC 2 cut(s) 394, 495
BsiHKAI GWGCWC 3 cut(s) 102, 465, 489
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 4 cut(s) 492, 638, 648, 688
BslI CCNNNNNNNGG 2 cut(s) 595, 694
BsmAI GTCTC 2 cut(s) 508, 692
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 2 cut(s) 394, 495
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 4 cut(s) 102, 465, 489, 644
Bsp143I GATC 3 cut(s) 165, 256, 507
Bsp1720I GCTNAGC 1 cut(s) 464
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 625
BspANI GGCC 2 cut(s) 394, 495
BspCNI CTCAG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 657
BspPI GGATC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 5 cut(s) 142, 331, 340, 381, 496
BssMI GATC 3 cut(s) 165, 256, 507
BssT1I CCWWGG 3 cut(s) 142, 331, 381
Bst4CI ACNGT 3 cut(s) 136, 500, 607
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 464
BstDSI CCRYGG 2 cut(s) 331, 496
BstF5I GGATG 3 cut(s) 25, 336, 458
BstKTI GATC 3 cut(s) 168, 259, 510
BstMAI GTCTC 2 cut(s) 508, 692
BstMBI GATC 3 cut(s) 165, 256, 507
BstMWI GCNNNNNNNGC 2 cut(s) 366, 690
BstSCI CCNGG 2 cut(s) 637, 647
BstV1I GCAGC 1 cut(s) 608
BstXI CCANNNNNNTGG 1 cut(s) 731
BsuRI GGCC 2 cut(s) 394, 495
BtgI CCRYGG 2 cut(s) 331, 496
BtsCI GGATG 3 cut(s) 25, 336, 458
BtsIMutI CAGTG 2 cut(s) 132, 603
Cac8I GCNNGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 544, 734
Csp6I GTAC 1 cut(s) 181
CviAII CATG 7 cut(s) 43, 107, 332, 548, 590, 667, 694
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 464
DpnI GATC 3 cut(s) 167, 258, 509
DpnII GATC 3 cut(s) 165, 256, 507
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 3 cut(s) 142, 331, 381
Eco24I GRGCYC 2 cut(s) 102, 644
Eco47I GGWCC 2 cut(s) 544, 734
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 100
EcoT14I CCWWGG 3 cut(s) 142, 331, 381
EcoT38I GRGCYC 2 cut(s) 102, 644
ErhI CCWWGG 3 cut(s) 142, 331, 381
FaeI CATG 7 cut(s) 46, 110, 335, 551, 593, 670, 697
FaiI YATR 9 cut(s) 44, 108, 195, 333, 549, 586, 591, 668, 695
FatI CATG 7 cut(s) 42, 106, 331, 547, 589, 666, 693
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 2 cut(s) 622, 625
FokI GGATG 3 cut(s) 12, 323, 465
FriOI GRGCYC 2 cut(s) 102, 644
Fsp4HI GCNGC 2 cut(s) 622, 625
GluI GCNGC 2 cut(s) 622, 625
HaeIII GGCC 2 cut(s) 394, 495
HapII CCGG 4 cut(s) 492, 638, 648, 688
Hin1II CATG 7 cut(s) 46, 110, 335, 551, 593, 670, 697
HincII GTYRAC 1 cut(s) 614
HindII GTYRAC 1 cut(s) 614
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 4 cut(s) 60, 217, 280, 610
HpaII CCGG 4 cut(s) 492, 638, 648, 688
HphI GGTGA 2 cut(s) 370, 481
Hpy166II GTNNAC 3 cut(s) 228, 388, 614
Hpy188III TCNNGA 9 cut(s) 221, 343, 352, 413, 421, 505, 511, 659, 677
Hpy8I GTNNAC 3 cut(s) 228, 388, 614
HpyAV CCTTC 2 cut(s) 535, 646
HpyCH4III ACNGT 3 cut(s) 136, 500, 607
HpyCH4V TGCA 2 cut(s) 251, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 690
HpyF3I CTNAG 1 cut(s) 464
Hsp92II CATG 7 cut(s) 46, 110, 335, 551, 593, 670, 697
Kzo9I GATC 3 cut(s) 165, 256, 507
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 690
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 2 cut(s) 345, 369
MaeIII GTNAC 3 cut(s) 110, 160, 710
MalI GATC 3 cut(s) 167, 258, 509
MboI GATC 3 cut(s) 165, 256, 507
MboII GAAGA 6 cut(s) 104, 107, 181, 256, 335, 367
MhlI GDGCHC 4 cut(s) 102, 465, 489, 644
MlyI GAGTC 2 cut(s) 69, 619
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 7 cut(s) 166, 265, 350, 507, 517, 552, 588
MslI CAYNNNNRTG 1 cut(s) 729
MspI CCGG 4 cut(s) 492, 638, 648, 688
MspR9I CCNGG 2 cut(s) 639, 649
Mva1269I GAATGC 1 cut(s) 475
MwoI GCNNNNNNNGC 2 cut(s) 366, 690
NciI CCSGG 2 cut(s) 639, 649
NcoI CCATGG 1 cut(s) 331
NdeII GATC 3 cut(s) 165, 256, 507
NlaIII CATG 7 cut(s) 46, 110, 335, 551, 593, 670, 697
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 90
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 217, 280
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 2 cut(s) 623, 626
PleI GAGTC 2 cut(s) 68, 618
PpsI GAGTC 2 cut(s) 68, 618
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 544, 734
PsyI GACNNNGTC 1 cut(s) 404
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 729
SacI GAGCTC 1 cut(s) 102
SalI GTCGAC 1 cut(s) 612
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 2 cut(s) 622, 625
Sau3AI GATC 3 cut(s) 165, 256, 507
Sau96I GGNCC 2 cut(s) 544, 734
SchI GAGTC 2 cut(s) 69, 619
ScrFI CCNGG 2 cut(s) 639, 649
SduI GDGCHC 4 cut(s) 102, 465, 489, 644
SetI ASST 7 cut(s) 21, 102, 371, 387, 429, 619, 657
SfaNI GCATC 2 cut(s) 345, 369
SinI GGWCC 2 cut(s) 544, 734
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SsiI CCGC 1 cut(s) 625
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 637, 647
StyI CCWWGG 3 cut(s) 142, 331, 381
TaaI ACNGT 3 cut(s) 136, 500, 607
TaqI TCGA 5 cut(s) 21, 288, 363, 506, 613
TaqII GACCGA 1 cut(s) 398
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 2 cut(s) 217, 280
TscAI CASTG 2 cut(s) 139, 610
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 17, 683, 694
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 139, 610
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 544, 734
XmiI GTMKAC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.