Rroxscaffold_5G00335850

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000511
Physical Location & Seq
Forward (+)
3407421 .. 3410848
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335850.1

Sequence Viewer

Length: 2049 bp
ATGCTAGGCCTAGCACACAATGTGTCTACCAAGGTAGCCTCAGTAGTCCACACTACTCAGAAAACCATTGCTGGGGAGCTTAGCCTGTTTGCCATGTCTGACAAGAAGATCTTGGAGGAGATTTACACAACTCATGTCCATGCTGATGAATCCTTTGATGACGATTCTCTCTTCATCATTGTTGAGAACATCCTCAAGCGTGCAACCCAAAATGTTGATAAAATAGTGCAGGGTACCCAAGTGCATGTGGACAACATAGAGGAGAAAACCCCCAAAGCCAGTTTCAGCGTACCATTGTGCACGCTTAAGGGAATCTCCTGCGAGATGCAATGCAAGCCTCCTGGTGACGAAATCGCCCACAACACAACAGTGGCAATACTCAACAAGCTCTCAAAGTATTCATGGGAAGCAAAGGCATCACTGACCCTAGCAGCTTTTGCTATGGAATATGGTGAATTCTGCCTCCTGGCGCAGCTTCGCGAATCAGACCACCTTGCCAAATCAATTGCAATCCTCAAACGAGTCCCTGTTCTCCTCAAGCCGTCAGAGCTGCACAAGCGCAGGCAATCAATTCTCGAGCTTAACAATCTGATCAAGGCCATACTGCAAGTGATCGAATGCATCGACCAGTTCAATAAGTATTCCACTTATGACCCAAAAGATGTCCCCGATTTGTCTATAGCATTGGATCATATTCCGGTTGATGTTTATTGGGTTATCATCACTGTTGTTGCTTGTGCCACTAAGATCACTATACTCACTAGTGATGAGGACAAGGAGTATGATCTAGCCCCTTATTCGCAAAAAATCCACTATGTCCTTAACAAGCTAACGATTCAGCTAAGAGGTTGCAGGAAACAAATTGAGGAGGCAGAGAATTACAGAAGGATCACGAAATTGTTCCGAACCCCTACTGAAATTATGGAGGTTTTCAAGGGATTGATATTTACAAAGGATAATGTCCAGCCACTCATCGATGGTTCAACTAAGCAAACGGTTAATATCGACATCCTAAGGAGAAAGAATGTGTTATTGTTCATTTCCAGCTTAGACGTCTCGGACGATGACATTTCGATTCTGAAACCGATCCACGAGTTCACAAAGAAAGACAATCAGTATAAGATTGTCTGGATTCCAATTGTGGAGCAATGGACTGATGACCTGAGAAAAAAGTTTGATATCCTGAAGAACAAGATGCCGTGGTTTACGCTGCAGTACTCTGGACCTATTGCAGGCATCAAGTTCATCAAGAAGGAGTGGAATTTCAAGGGTAAGCCTACAGTGGTGGTGATGAACCCACAAGGAAAGGTCGAACACTCTAACGCTCTCCACATGATTCGGGTATGGGGAGCCAAGGCCTACCCTTTCACAAAGACAACTGAAGAAGAACTATCACATTCTCATGCAGGAAAATGGGTTGGCTCCGTTGTTGAAGGAACTCACCCATCTGTGCACACTTGGATCAAAGAGGATAAGTACATCTTCTTCTATGGCGGTAAAGACAACGAATGGATTCAGCAATTCACAAAGAAAGTGACTGCCCTTGCAAATGATCCAATCTTCAAGGAAGCAAAGATTCACCTAGAGTTGGTCTGCGTCGGAAAAGGCAGCAAAGGCGAAGATGACCATGGCGTTCTAGGCCGCTTCTGGACTAGTGTAGAGAGCCTGTTCTTCACCAAAGGCCACAAGCAGGTGGACTCAGTGAATCAAGAAATCCAGAAGCTTCTCTCTTACAAAAACGAAAGTGGATGGGCGGTGCTTAGCAAAGGGGCGACTGTGTTGGTCACAGGTCATGGTGTCTCGGTGTTGAAGGTGGTAGAGGACTTTGAGAAATGGAAGGGCCAAGTCAAGGAGAAAGGGTTTGAGTTTTGTTTCAAGGCCTATCATGAGAAGATTAGTCAGGCTAGTCGACCTTGCTGCCGTCTGGACATTCCGGGGTCTAACGGAAAGGTTCCGGAGGTGATGAAGTGCCCTGATTGCCACCGTAGTATGGAGACTTTTATCAGTTACAAGTGCTGCCACATTGATGGTCCTACTGCACATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

682

Amino Acids

77.46

Weight (kDa)

8.17

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 33 - 304 1.7e-84 Sieve element occlusion N-terminus
SEO_C PF14577 476 - 540 3.6e-14 Sieve element occlusion C-terminus
SEO_C PF14577 549 - 674 7.5e-34 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1681
AatII GACGTC 1 cut(s) 1056
Acc36I ACCTGC 1 cut(s) 1681
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 2 cut(s) 26, 1909
AccII CGCG 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 1954
AciI CCGC 3 cut(s) 1494, 1642, 1754
AclWI GGATC 5 cut(s) 696, 896, 1081, 1469, 1547
AcsI RAATTY 2 cut(s) 455, 1261
AcuI CTGAAG 2 cut(s) 1205, 1401
AcyI GRCGYC 1 cut(s) 1053
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 4 cut(s) 235, 291, 1217, 1478
AfiI CCNNNNNNNGG 6 cut(s) 72, 1232, 1588, 1690, 1849, 1990
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 8 cut(s) 634, 934, 984, 1267, 1433, 1564, 1810, 1876
AhlI ACTAGT 2 cut(s) 761, 1652
AjnI CCWGG 2 cut(s) 340, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AleI CACNNNNGTG 1 cut(s) 368
Alw21I GWGCWC 2 cut(s) 302, 1455
Alw26I GTCTC 3 cut(s) 1060, 1804, 1988
Alw44I GTGCAC 2 cut(s) 298, 1451
AlwI GGATC 5 cut(s) 696, 896, 1081, 1469, 1547
Ama87I CYCGRG 1 cut(s) 575
Aor13HI TCCGGA 1 cut(s) 1954
AoxI GGCC 7 cut(s) 7, 597, 1356, 1639, 1681, 1840, 1878
ApaLI GTGCAC 2 cut(s) 298, 1451
ApeKI GCWGC 7 cut(s) 431, 472, 550, 1210, 1608, 1917, 2016
ApoI RAATTY 2 cut(s) 455, 1261
Asp700I GAANNNNTTC 2 cut(s) 899, 1512
Asp718I GGTACC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 472, 561
AspS9I GGNCC 3 cut(s) 1223, 1840, 2030
AsuC2I CCSGG 1 cut(s) 1935
AsuHPI GGTGA 7 cut(s) 356, 464, 1300, 1433, 1571, 1666, 1972
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 2 cut(s) 1223, 2030
AxyI CCTNAGG 1 cut(s) 1013
BaeGI GKGCMC 3 cut(s) 302, 1455, 1973
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BanI GGYRCC 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 1469, 1501
BauI CACGAG 1 cut(s) 1091
Bbv12I GWGCWC 2 cut(s) 302, 1455
BbvI GCAGC 7 cut(s) 443, 484, 537, 1197, 1620, 1904, 2003
BccI CCATC 4 cut(s) 971, 1453, 1743, 2021
BceAI ACGGC 3 cut(s) 526, 1183, 1905
BcgI CGANNNNNNTGC 2 cut(s) 1899, 1933
BciT130I CCWGG 2 cut(s) 342, 467
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 1 cut(s) 1935
BcoDI GTCTC 3 cut(s) 1060, 1804, 1988
BcuI ACTAGT 2 cut(s) 761, 1652
BfaI CTAG 9 cut(s) 5, 11, 428, 762, 788, 1583, 1637, 1653, 1905
BfmI CTRYAG 3 cut(s) 678, 1211, 1278
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 1681
BglII AGATCT 1 cut(s) 108
BisI GCNGC 8 cut(s) 432, 473, 551, 1211, 1609, 1642, 1918, 2017
BlpI GCTNAGC 2 cut(s) 80, 1760
BlsI GCNGC 8 cut(s) 433, 474, 552, 1212, 1610, 1643, 1919, 2018
BmcAI AGTACT 1 cut(s) 1217
Bme1390I CCNGG 3 cut(s) 342, 467, 1935
Bme18I GGWCC 2 cut(s) 1223, 2030
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 1223, 1840, 2030
BmiI GGNNCC 4 cut(s) 235, 1351, 1423, 1953
BmrFI CCNGG 3 cut(s) 342, 467, 1935
BmsI GCATC 5 cut(s) 315, 425, 630, 1185, 1245
Bpu1102I GCTNAGC 2 cut(s) 80, 1760
BpuEI CTTGAG 2 cut(s) 179, 521
BpuMI CCSGG 1 cut(s) 1935
Bsa29I ATCGAT 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 1053
BsaJI CCNNGG 5 cut(s) 30, 1199, 1353, 1627, 1934
BsaWI WCCGGW 2 cut(s) 697, 1954
BsaXI ACNNNNNCTCC 2 cut(s) 1844, 1874
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 1232, 1588, 1690, 1849, 1990
Bse1I ACTGG 2 cut(s) 279, 628
Bse21I CCTNAGG 1 cut(s) 1013
Bse3DI GCAATG 3 cut(s) 66, 335, 1154
BseAI TCCGGA 1 cut(s) 1954
BseBI CCWGG 2 cut(s) 342, 467
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 5 cut(s) 30, 1199, 1353, 1627, 1934
BseGI GGATG 3 cut(s) 189, 1008, 1754
BseLI CCNNNNNNNGG 6 cut(s) 72, 1232, 1588, 1690, 1849, 1990
BseMI GCAATG 3 cut(s) 66, 335, 1154
BseMII CTCAG 4 cut(s) 54, 71, 1154, 1713
BseNI ACTGG 2 cut(s) 279, 628
BseRI GAGGAG 4 cut(s) 131, 275, 524, 881
BseSI GKGCMC 3 cut(s) 302, 1455, 1973
BseXI GCAGC 7 cut(s) 443, 484, 537, 1197, 1620, 1904, 2003
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 3 cut(s) 248, 536, 2022
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 7 cut(s) 9, 599, 1358, 1641, 1683, 1842, 1880
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 975
BsiHKAI GWGCWC 2 cut(s) 302, 1455
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 3 cut(s) 698, 1934, 1955
BslFI GGGAC 2 cut(s) 509, 650
BslI CCNNNNNNNGG 6 cut(s) 72, 1232, 1588, 1690, 1849, 1990
BsmAI GTCTC 3 cut(s) 1060, 1804, 1988
BsmBI CGTCTC 1 cut(s) 1060
BsmFI GGGAC 2 cut(s) 509, 650
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 7 cut(s) 9, 599, 1358, 1641, 1683, 1842, 1880
BsoBI CYCGRG 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 302, 1455, 1973
Bsp13I TCCGGA 1 cut(s) 1954
Bsp1720I GCTNAGC 2 cut(s) 80, 1760
Bsp19I CCATGG 1 cut(s) 1627
Bsp68I TCGCGA 1 cut(s) 480
BspACI CCGC 3 cut(s) 1494, 1642, 1754
BspANI GGCC 7 cut(s) 9, 599, 1358, 1641, 1683, 1842, 1880
BspCNI CTCAG 4 cut(s) 53, 70, 1155, 1712
BspDI ATCGAT 1 cut(s) 975
BspEI TCCGGA 1 cut(s) 1954
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 1885
BspLI GGNNCC 4 cut(s) 235, 1351, 1423, 1953
BspMAI CTGCAG 1 cut(s) 1215
BspMI ACCTGC 1 cut(s) 1681
BspPI GGATC 5 cut(s) 696, 896, 1081, 1469, 1547
BspT107I GGYRCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 305
BsrDI GCAATG 3 cut(s) 66, 335, 1154
BsrI ACTGG 2 cut(s) 279, 628
BssECI CCNNGG 5 cut(s) 30, 1199, 1353, 1627, 1934
BssNI GRCGYC 1 cut(s) 1053
BssSI CACGAG 1 cut(s) 1091
BssT1I CCWWGG 3 cut(s) 30, 1353, 1627
Bst2BI CACGAG 1 cut(s) 1091
Bst2UI CCWGG 2 cut(s) 342, 467
Bst4CI ACNGT 6 cut(s) 370, 727, 997, 1282, 1777, 1985
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 1053
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 5 cut(s) 201, 302, 335, 563, 1234
BstDSI CCRYGG 2 cut(s) 1199, 1627
BstENI CCTNNNNNAGG 1 cut(s) 1230
BstF5I GGATG 3 cut(s) 189, 1008, 1754
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 2 cut(s) 472, 561
BstMAI GTCTC 3 cut(s) 1060, 1804, 1988
BstMWI GCNNNNNNNGC 7 cut(s) 334, 437, 547, 556, 1614, 1638, 1977
BstNI CCWGG 2 cut(s) 342, 467
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 340, 465, 1933
BstSFI CTRYAG 3 cut(s) 678, 1211, 1278
BstSLI GKGCMC 3 cut(s) 302, 1455, 1973
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 7 cut(s) 443, 484, 537, 1197, 1620, 1904, 2003
BstX2I RGATCY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 2027
BstYI RGATCY 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 975
Bsu36I CCTNAGG 1 cut(s) 1013
BsuRI GGCC 7 cut(s) 9, 599, 1358, 1641, 1683, 1842, 1880
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 2 cut(s) 1199, 1627
BtsCI GGATG 3 cut(s) 189, 1008, 1754
BtsIMutI CAGTG 5 cut(s) 375, 419, 723, 1287, 1707
BtuMI TCGCGA 1 cut(s) 480
BveI ACCTGC 1 cut(s) 1681
Cac8I GCNNGC 5 cut(s) 201, 302, 335, 563, 1234
CciI TCATGA 1 cut(s) 1885
CfoI GCGC 2 cut(s) 472, 561
Cfr13I GGNCC 3 cut(s) 1223, 1840, 2030
ClaI ATCGAT 1 cut(s) 975
CseI GACGC 1 cut(s) 1585
Csp6I GTAC 4 cut(s) 234, 290, 1216, 1477
CviQI GTAC 4 cut(s) 234, 290, 1216, 1477
DraIII CACNNNGTG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 3 cut(s) 30, 1353, 1627
Eco147I AGGCCT 3 cut(s) 9, 1358, 1880
Eco32I GATATC 1 cut(s) 1180
Eco47I GGWCC 2 cut(s) 1223, 2030
Eco57I CTGAAG 2 cut(s) 1205, 1401
Eco81I CCTNAGG 1 cut(s) 1013
Eco88I CYCGRG 1 cut(s) 575
EcoNI CCTNNNNNAGG 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 340, 465
EcoRV GATATC 1 cut(s) 1180
EcoT14I CCWWGG 3 cut(s) 30, 1353, 1627
EcoT22I ATGCAT 1 cut(s) 623
ErhI CCWWGG 3 cut(s) 30, 1353, 1627
Esp3I CGTCTC 1 cut(s) 1060
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 1466, 1498
FaqI GGGAC 2 cut(s) 509, 650
FbaI TGATCA 1 cut(s) 591
FblI GTMKAC 2 cut(s) 26, 1909
Fnu4HI GCNGC 8 cut(s) 432, 473, 551, 1211, 1609, 1642, 1918, 2017
FokI GGATG 3 cut(s) 176, 995, 1761
Fsp4HI GCNGC 8 cut(s) 432, 473, 551, 1211, 1609, 1642, 1918, 2017
FspBI CTAG 9 cut(s) 5, 11, 428, 762, 788, 1583, 1637, 1653, 1905
GlaI GCGC 2 cut(s) 471, 560
GluI GCNGC 8 cut(s) 432, 473, 551, 1211, 1609, 1642, 1918, 2017
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 7 cut(s) 9, 599, 1358, 1641, 1683, 1842, 1880
HapII CCGG 3 cut(s) 698, 1934, 1955
HgaI GACGC 1 cut(s) 1585
HhaI GCGC 2 cut(s) 472, 561
Hin1I GRCGYC 1 cut(s) 1053
Hin6I GCGC 2 cut(s) 470, 559
HinP1I GCGC 2 cut(s) 470, 559
HincII GTYRAC 1 cut(s) 1910
HindII GTYRAC 1 cut(s) 1910
HindIII AAGCTT 1 cut(s) 1721
HpaII CCGG 3 cut(s) 698, 1934, 1955
HphI GGTGA 7 cut(s) 356, 464, 1300, 1433, 1571, 1666, 1972
Hpy166II GTNNAC 9 cut(s) 27, 49, 250, 300, 1098, 1206, 1453, 1696, 1910
Hpy188I TCNGA 9 cut(s) 60, 100, 487, 547, 591, 905, 1060, 1080, 1601
Hpy8I GTNNAC 9 cut(s) 27, 49, 250, 300, 1098, 1206, 1453, 1696, 1910
Hpy99I CGWCG 1 cut(s) 1601
HpyAV CCTTC 5 cut(s) 879, 1246, 1427, 1804, 1831
HpyCH4III ACNGT 6 cut(s) 370, 727, 997, 1282, 1777, 1985
HpyCH4IV ACGT 1 cut(s) 1053
HpyF10VI GCNNNNNNNGC 7 cut(s) 334, 437, 547, 556, 1614, 1638, 1977
HpySE526I ACGT 1 cut(s) 1053
Hsp92I GRCGYC 1 cut(s) 1053
HspAI GCGC 2 cut(s) 470, 559
Kpn2I TCCGGA 1 cut(s) 1954
KpnI GGTACC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 591
LmnI GCTCC 4 cut(s) 76, 1144, 1349, 1427
Lsp1109I GCAGC 7 cut(s) 443, 484, 537, 1197, 1620, 1904, 2003
LweI GCATC 5 cut(s) 315, 425, 630, 1185, 1245
MaeI CTAG 9 cut(s) 5, 11, 428, 762, 788, 1583, 1637, 1653, 1905
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 4 cut(s) 344, 1534, 1783, 2006
MfeI CAATTG 2 cut(s) 504, 1137
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 3 cut(s) 302, 1455, 1973
MlyI GAGTC 2 cut(s) 531, 1691
MmeI TCCRAC 1 cut(s) 1579
Mph1103I ATGCAT 1 cut(s) 623
MroI TCCGGA 1 cut(s) 1954
MroXI GAANNNNTTC 2 cut(s) 899, 1512
MseI TTAA 5 cut(s) 306, 582, 822, 999, 2047
MslI CAYNNNNRTG 5 cut(s) 138, 144, 368, 1401, 2025
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 698, 1934, 1955
MspR9I CCNGG 3 cut(s) 342, 467, 1935
MunI CAATTG 2 cut(s) 504, 1137
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 2 cut(s) 342, 467
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 7 cut(s) 334, 437, 547, 556, 1614, 1638, 1977
NciI CCSGG 1 cut(s) 1935
NcoI CCATGG 1 cut(s) 1627
NlaIV GGNNCC 4 cut(s) 235, 1351, 1423, 1953
NmuCI GTSAC 3 cut(s) 344, 1534, 1783
NruI TCGCGA 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 623
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 575
PagI TCATGA 1 cut(s) 1885
PaqCI CACCTGC 1 cut(s) 1681
PceI AGGCCT 3 cut(s) 9, 1358, 1880
PcsI WCGNNNNNNNCGW 2 cut(s) 621, 1059
PctI GAATGC 1 cut(s) 623
PdmI GAANNNNTTC 2 cut(s) 899, 1512
PkrI GCNGC 8 cut(s) 433, 474, 552, 1212, 1610, 1643, 1919, 2018
PleI GAGTC 2 cut(s) 530, 1691
PpsI GAGTC 2 cut(s) 530, 1691
Psp6I CCWGG 2 cut(s) 340, 465
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 340, 465
PspN4I GGNNCC 4 cut(s) 235, 1351, 1423, 1953
PspPI GGNCC 3 cut(s) 1223, 1840, 2030
PstI CTGCAG 1 cut(s) 1215
PsuI RGATCY 1 cut(s) 108
RruI TCGCGA 1 cut(s) 480
RsaI GTAC 4 cut(s) 235, 291, 1217, 1478
RsaNI GTAC 4 cut(s) 234, 290, 1216, 1477
RseI CAYNNNNRTG 5 cut(s) 138, 144, 368, 1401, 2025
SalI GTCGAC 1 cut(s) 1908
SaqAI TTAA 5 cut(s) 306, 582, 822, 999, 2047
SatI GCNGC 8 cut(s) 432, 473, 551, 1211, 1609, 1642, 1918, 2017
Sau96I GGNCC 3 cut(s) 1223, 1840, 2030
ScaI AGTACT 1 cut(s) 1217
SchI GAGTC 2 cut(s) 531, 1691
ScrFI CCNGG 3 cut(s) 342, 467, 1935
SduI GDGCHC 3 cut(s) 302, 1455, 1973
SfaNI GCATC 5 cut(s) 315, 425, 630, 1185, 1245
SfcI CTRYAG 3 cut(s) 678, 1211, 1278
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 2 cut(s) 1223, 2030
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 5 cut(s) 138, 144, 368, 1401, 2025
SmlI CTYRAG 4 cut(s) 194, 305, 536, 575
SmoI CTYRAG 4 cut(s) 194, 305, 536, 575
SpeI ACTAGT 2 cut(s) 761, 1652
SseBI AGGCCT 3 cut(s) 9, 1358, 1880
SsiI CCGC 3 cut(s) 1494, 1642, 1754
SspMI CTAG 9 cut(s) 5, 11, 428, 762, 788, 1583, 1637, 1653, 1905
StuI AGGCCT 3 cut(s) 9, 1358, 1880
StyD4I CCNGG 3 cut(s) 340, 465, 1933
StyI CCWWGG 3 cut(s) 30, 1353, 1627
TaaI ACNGT 6 cut(s) 370, 727, 997, 1282, 1777, 1985
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 8 cut(s) 576, 615, 624, 975, 1005, 1073, 1311, 1909
TatI WGTACW 2 cut(s) 1215, 1476
TauI GCSGC 1 cut(s) 1644
Tru1I TTAA 5 cut(s) 306, 582, 822, 999, 2047
Tru9I TTAA 5 cut(s) 306, 582, 822, 999, 2047
TscAI CASTG 5 cut(s) 375, 426, 730, 1287, 1707
TseFI GTSAC 3 cut(s) 344, 1534, 1783
TseI GCWGC 7 cut(s) 431, 472, 550, 1210, 1608, 1917, 2016
Tsp45I GTSAC 3 cut(s) 344, 1534, 1783
TspDTI ATGAA 7 cut(s) 162, 163, 390, 1027, 1234, 1307, 1979
TspGWI ACGGA 2 cut(s) 1414, 1959
TspRI CASTG 5 cut(s) 375, 426, 730, 1287, 1707
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 2 cut(s) 298, 1451
VpaK11BI GGWCC 2 cut(s) 1223, 2030
XagI CCTNNNNNAGG 1 cut(s) 1230
XapI RAATTY 2 cut(s) 455, 1261
XceI RCATGY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 575
XmiI GTMKAC 2 cut(s) 26, 1909
XmnI GAANNNNTTC 2 cut(s) 899, 1512
XspI CTAG 9 cut(s) 5, 11, 428, 762, 788, 1583, 1637, 1653, 1905
ZraI GACGTC 1 cut(s) 1054
ZrmI AGTACT 1 cut(s) 1217
Zsp2I ATGCAT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.