Prupe.1G029100_v2.0.a1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000511
Physical Location & Seq
Forward (+)
2071459 .. 2071849
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G029100.1

Sequence Viewer

Length: 378 bp
ATGTTCCACACCAAGATAAACAAGCAGGCCGACTTAGCCACACTAGAAATCCAAAAGCTACTTTCTTACAAAAATGAAAGTGGATGGGCTGTGCTCAGCAAGGGGTCTTCTTTGGTTGTCGCTGGTCATGGTATCTCAATTTTGAAGGTGATAGAGGACTTTGACAAATGGAAGGGACAAGTGAGAGAGAAAGGCTTTGAGTTTTGTTTCACAACATACCATGCGAAGATTCGCCTAACACCTTGCTGCCGCCTTGATATTCCAGGCTCTACCGGGAAGGTCCCGGAGACAATGAACTGTCCCGATTGCAACCGTAGCATGGAGACTTTTATCAGTTACAAGTGCTGCCACATTGATGGTCCTAATGTGCATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

126

Amino Acids

14.09

Weight (kDa)

8.48

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 281, 317
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 246, 345
AspS9I GGNCC 2 cut(s) 280, 359
AsuC2I CCSGG 2 cut(s) 274, 284
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 280, 359
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 233, 332
BccI CCATC 2 cut(s) 78, 350
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 2 cut(s) 274, 284
BcoDI GTCTC 2 cut(s) 281, 317
BfaI CTAG 1 cut(s) 44
BisI GCNGC 3 cut(s) 247, 250, 346
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 3 cut(s) 248, 251, 347
Bme1390I CCNGG 3 cut(s) 264, 274, 284
Bme18I GGWCC 2 cut(s) 280, 359
BmgT120I GGNCC 2 cut(s) 280, 359
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 3 cut(s) 264, 274, 284
BpiI GAAGAC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 274, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 233, 332
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 273, 284
BslFI GGGAC 3 cut(s) 189, 266, 285
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 281, 317
BsmFI GGGAC 3 cut(s) 189, 266, 285
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 299, 314
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 34, 95
BstF5I GGATG 1 cut(s) 89
BstMAI GTCTC 2 cut(s) 281, 317
BstMWI GCNNNNNNNGC 2 cut(s) 35, 315
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 262, 272, 282
BstV1I GCAGC 2 cut(s) 233, 332
BstV2I GAAGAC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 280, 359
CviAII CATG 3 cut(s) 128, 221, 319
CviJI RGCY 6 cut(s) 29, 38, 58, 89, 195, 267
CviKI_1 RGCY 6 cut(s) 29, 38, 58, 89, 195, 267
DdeI CTNAG 2 cut(s) 34, 95
Eco47I GGWCC 2 cut(s) 280, 359
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 131, 224, 322
FaiI YATR 4 cut(s) 129, 217, 222, 320
FaqI GGGAC 3 cut(s) 189, 266, 285
FatI CATG 3 cut(s) 127, 220, 318
Fnu4HI GCNGC 3 cut(s) 247, 250, 346
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 247, 250, 346
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 247, 250, 346
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 273, 284
Hin1II CATG 3 cut(s) 131, 224, 322
HinfI GANTC 1 cut(s) 229
HpaII CCGG 2 cut(s) 273, 284
HphI GGTGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 139, 166, 271
HpyCH4III ACNGT 2 cut(s) 299, 314
HpyCH4V TGCA 2 cut(s) 309, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 315
HpyF3I CTNAG 2 cut(s) 34, 95
Hsp92II CATG 3 cut(s) 131, 224, 322
LpnPI CCDG 6 cut(s) 11, 108, 249, 276, 286, 297
Lsp1109I GCAGC 2 cut(s) 233, 332
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 2 cut(s) 99, 238
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 138
MnlI CCTC 1 cut(s) 148
MseI TTAA 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 2 cut(s) 273, 284
MspR9I CCNGG 3 cut(s) 264, 274, 284
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 35, 315
NciI CCSGG 2 cut(s) 274, 284
NlaIII CATG 3 cut(s) 131, 224, 322
NlaIV GGNNCC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 282
PkrI GCNGC 3 cut(s) 248, 251, 347
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 280, 359
PspPPI RGGWCCY 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 3 cut(s) 247, 250, 346
Sau96I GGNCC 2 cut(s) 280, 359
ScrFI CCNGG 3 cut(s) 264, 274, 284
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 60, 150, 244, 282
SinI GGWCC 2 cut(s) 280, 359
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 262, 272, 282
TaaI ACNGT 2 cut(s) 299, 314
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TseI GCWGC 2 cut(s) 246, 345
TspDTI ATGAA 2 cut(s) 90, 308
VpaK11BI GGWCC 2 cut(s) 280, 359
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.