Rh4BG024000

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000511
Physical Location & Seq
Forward (+)
3808775 .. 3810283
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG024000.1

Sequence Viewer

Length: 711 bp
ATGAGTTCACAAAGAAAGACAATCAGTATATATAAGATTGTCTGGATTCTAATTGTGGAGCAATGGACTGATGACCTGAGAAAGAAGTTTGATATCATGAAGAACAAGATGCCGTGGTTTACCGTGCAGTACTCTAGACCTATAGCAGGCCTCAAGTTCATCAAGGAGGAGTGGAACTTCAAGGGTAAGCCTACATTGGTGATGATGAACCCACAAGGAAAGGTCAAACACCCTAACGCTCTCCACATGATTCGGGTATGGGGAGCCAAGGCCTTCCCTTTCACAGAGACAACAGAAAAAGAACTGTCACATTCTCATGGAAATAAATGGGTTACCTCTGTAGTTGATGAATTCACCCATCTGTGCCAGCTTGGGTCGACCCGGTCAGTCAAGAAATCCAGAAGCTTCTCTCTTACAAAAACGAAAGCGGATGGGCGGTGCTTAGCAAAGGGTCATGGTGTCTCGGTGTTGAAGGCGGTAGAGGACTTTGAGAAATGGAAGGACCATGTCAAGGAGACAGGGTTTGAGTTTTGTTTCAAGGCCTATTATGGGAAGATTATTCAGGCTAGTCGACCTTGCTGCCGTCTGGACATTCCGGGGACTAACGGAAAGGTCCCGGAGACGATGAAGTGTCCGGATTGCCATAGGAGTATGGAGACTTTTATCAGTTACAAGTACTGCCACATTGATGGTCCTAACGCACATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

236

Amino Acids

27.27

Weight (kDa)

9.53

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_C PF14577 147 - 228 5.5e-18 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 377, 571
AccIII TCCGGA 1 cut(s) 634
AciI CCGC 3 cut(s) 428, 436, 476
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 2 cut(s) 131, 677
AfiI CCNNNNNNNGG 3 cut(s) 146, 511, 549
AgsI TTSAA 3 cut(s) 181, 472, 538
AluBI AGCT 2 cut(s) 370, 405
AluI AGCT 2 cut(s) 370, 405
Alw26I GTCTC 5 cut(s) 281, 466, 509, 614, 650
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 3 cut(s) 148, 270, 540
ApeKI GCWGC 1 cut(s) 579
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 502, 613, 692
AsuC2I CCSGG 3 cut(s) 382, 597, 617
AsuHPI GGTGA 2 cut(s) 211, 346
AvaII GGWCC 3 cut(s) 502, 613, 692
BbvI GCAGC 1 cut(s) 566
BccI CCATC 3 cut(s) 366, 425, 683
BceAI ACGGC 2 cut(s) 97, 567
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BcnI CCSGG 3 cut(s) 382, 597, 617
BcoDI GTCTC 5 cut(s) 281, 466, 509, 614, 650
BfaI CTAG 2 cut(s) 135, 567
BfmI CTRYAG 2 cut(s) 141, 339
BisI GCNGC 1 cut(s) 580
BlpI GCTNAGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 581
BmcAI AGTACT 2 cut(s) 131, 677
Bme1390I CCNGG 3 cut(s) 382, 597, 617
Bme18I GGWCC 3 cut(s) 502, 613, 692
BmgT120I GGNCC 3 cut(s) 502, 613, 692
BmiI GGNNCC 2 cut(s) 265, 615
BmrFI CCNGG 3 cut(s) 382, 597, 617
BmsI GCATC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 3 cut(s) 382, 597, 617
BsaJI CCNNGG 3 cut(s) 113, 267, 596
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 511, 549
Bse3DI GCAATG 1 cut(s) 68
BseAI TCCGGA 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 113, 267, 596
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 3 cut(s) 146, 511, 549
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 566
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 3 cut(s) 150, 272, 542
BsiSI CCGG 4 cut(s) 382, 596, 617, 635
BslFI GGGAC 2 cut(s) 599, 613
BslI CCNNNNNNNGG 3 cut(s) 146, 511, 549
BsmAI GTCTC 5 cut(s) 281, 466, 509, 614, 650
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 599, 613
BsnI GGCC 3 cut(s) 150, 272, 542
Bsp13I TCCGGA 1 cut(s) 634
Bsp1720I GCTNAGC 1 cut(s) 442
BspACI CCGC 3 cut(s) 428, 436, 476
BspANI GGCC 3 cut(s) 150, 272, 542
BspCNI CTCAG 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 634
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 265, 615
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 113, 267, 596
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 124, 306
BstC8I GCNNGC 2 cut(s) 148, 368
BstDEI CTNAG 2 cut(s) 77, 442
BstDSI CCRYGG 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 436
BstMAI GTCTC 5 cut(s) 281, 466, 509, 614, 650
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 3 cut(s) 380, 595, 615
BstSFI CTRYAG 2 cut(s) 141, 339
BstV1I GCAGC 1 cut(s) 566
BstXI CCANNNNNNTGG 1 cut(s) 689
BsuRI GGCC 3 cut(s) 150, 272, 542
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 148, 368
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 502, 613, 692
Csp6I GTAC 2 cut(s) 130, 676
CviAII CATG 5 cut(s) 97, 247, 317, 455, 506
CviJI RGCY 8 cut(s) 150, 190, 266, 272, 370, 405, 542, 566
CviKI_1 RGCY 8 cut(s) 150, 190, 266, 272, 370, 405, 542, 566
CviQI GTAC 2 cut(s) 130, 676
DdeI CTNAG 2 cut(s) 77, 442
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 3 cut(s) 150, 272, 542
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 3 cut(s) 502, 613, 692
Eco91I GGTNACC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 350
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 5 cut(s) 100, 250, 320, 458, 509
FaqI GGGAC 2 cut(s) 599, 613
FatI CATG 5 cut(s) 96, 246, 316, 454, 505
FblI GTMKAC 2 cut(s) 377, 571
Fnu4HI GCNGC 1 cut(s) 580
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 580
FspBI CTAG 2 cut(s) 135, 567
GluI GCNGC 1 cut(s) 580
HaeIII GGCC 3 cut(s) 150, 272, 542
HapII CCGG 4 cut(s) 382, 596, 617, 635
Hin1II CATG 5 cut(s) 100, 250, 320, 458, 509
HincII GTYRAC 2 cut(s) 378, 572
HindII GTYRAC 2 cut(s) 378, 572
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 2 cut(s) 46, 250
HpaII CCGG 4 cut(s) 382, 596, 617, 635
HphI GGTGA 2 cut(s) 211, 346
Hpy166II GTNNAC 4 cut(s) 8, 120, 378, 572
Hpy188III TCNNGA 7 cut(s) 43, 97, 135, 391, 399, 587, 635
Hpy8I GTNNAC 4 cut(s) 8, 120, 378, 572
HpyAV CCTTC 3 cut(s) 283, 466, 493
HpyCH4III ACNGT 2 cut(s) 124, 306
HpyCH4V TGCA 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 77, 442
Hsp92II CATG 5 cut(s) 100, 250, 320, 458, 509
Kpn2I TCCGGA 1 cut(s) 634
LmnI GCTCC 2 cut(s) 58, 263
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 135, 567
MaeIII GTNAC 3 cut(s) 306, 331, 668
MboII GAAGA 2 cut(s) 112, 565
MluCI AATT 2 cut(s) 51, 350
MnlI CCTC 4 cut(s) 160, 161, 346, 475
MroI TCCGGA 1 cut(s) 634
MslI CAYNNNNRTG 2 cut(s) 315, 687
MspI CCGG 4 cut(s) 382, 596, 617, 635
MspR9I CCNGG 3 cut(s) 382, 597, 617
NciI CCSGG 3 cut(s) 382, 597, 617
NlaIII CATG 5 cut(s) 100, 250, 320, 458, 509
NlaIV GGNNCC 2 cut(s) 265, 615
NmuCI GTSAC 1 cut(s) 306
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 3 cut(s) 150, 272, 542
PfeI GAWTC 2 cut(s) 46, 250
PflFI GACNNNGTC 2 cut(s) 382, 506
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 613
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 265, 615
PspPI GGNCC 3 cut(s) 502, 613, 692
PspPPI RGGWCCY 1 cut(s) 613
PsyI GACNNNGTC 2 cut(s) 382, 506
RsaI GTAC 2 cut(s) 131, 677
RsaNI GTAC 2 cut(s) 130, 676
RseI CAYNNNNRTG 2 cut(s) 315, 687
SalI GTCGAC 2 cut(s) 376, 570
SatI GCNGC 1 cut(s) 580
Sau96I GGNCC 3 cut(s) 502, 613, 692
ScaI AGTACT 2 cut(s) 131, 677
ScrFI CCNGG 3 cut(s) 382, 597, 617
SetI ASST 8 cut(s) 78, 142, 225, 338, 372, 407, 577, 615
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 2 cut(s) 141, 339
SinI GGWCC 3 cut(s) 502, 613, 692
SmiMI CAYNNNNRTG 2 cut(s) 315, 687
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 51, 350
SseBI AGGCCT 3 cut(s) 150, 272, 542
SsiI CCGC 3 cut(s) 428, 436, 476
SspMI CTAG 2 cut(s) 135, 567
StuI AGGCCT 3 cut(s) 150, 272, 542
StyD4I CCNGG 3 cut(s) 380, 595, 615
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 124, 306
TaqI TCGA 2 cut(s) 377, 571
TasI AATT 2 cut(s) 51, 350
TatI WGTACW 2 cut(s) 129, 675
TfiI GAWTC 2 cut(s) 46, 250
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 5 cut(s) 113, 148, 221, 363, 641
TspGWI ACGGA 1 cut(s) 621
Tth111I GACNNNGTC 2 cut(s) 382, 506
VpaK11BI GGWCC 3 cut(s) 502, 613, 692
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 1 cut(s) 350
XbaI TCTAGA 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 377, 571
XspI CTAG 2 cut(s) 135, 567
ZrmI AGTACT 2 cut(s) 131, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.