MD13G1205800.v1.1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000511
Physical Location & Seq
Forward (+)
18658544 .. 18659913
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1205800.v1.1.491

Sequence Viewer

Length: 474 bp
ATGGACCATATTCCAGTTGATGTGTACTGGGCTGTTGCCACTGTTGTTGCTTGTGCAACTAAGATCACCATCCTCACCTGTAATGAGGACAAGGAGCATGATCTAGCCCCATTTGCTCAAAAAATTCACTATGTCCTAAACAAGCTTAAGATCCAGCTTATTGTCTGCAGAAAACAAATTGAGGAGGCAGAGACTTACCGGAGGCTAAGGAAAATCTTCCAAACTCCTACTGAAATCATGGAGGTTTTCAAGGCCCTGATTTTTACCAAGGAAAATGTCCAGCCGCTCGTTGATGGTTCTACTAAACAAATGGTTAAAATCGATATCCTGAGGAAGAAGAATGTGTTGTTCATTTCAAGCCTAGACATCTCTGATGATGATATCTCAATCCTCAAGCCCATCTATGATATGATAAAGAAAGACAATCAGCACAAGATTGTGTGGATTCCGATTGTGGAGCATTGGGACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

158

Amino Acids

18.4

Weight (kDa)

7.72

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 1 - 76 7.1e-18 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 286
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 123
AfaI GTAC 1 cut(s) 26
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 250, 357
AluBI AGCT 2 cut(s) 145, 157
AluI AGCT 2 cut(s) 145, 157
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 4, 253, 466
AsuHPI GGTGA 2 cut(s) 58, 67
AvaII GGWCC 2 cut(s) 4, 466
AxyI CCTNAGG 1 cut(s) 329
BccI CCATC 3 cut(s) 77, 287, 407
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 104, 362
BfmI CTRYAG 1 cut(s) 166
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme18I GGWCC 2 cut(s) 4, 466
BmgT120I GGNCC 3 cut(s) 4, 253, 466
BmiI GGNNCC 1 cut(s) 467
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 14, 32
Bse21I CCTNAGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 68
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 14, 32
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 3 cut(s) 63, 100, 150
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 286
BsrI ACTGG 2 cut(s) 14, 32
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 63, 100, 150
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 60, 206, 329
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 3 cut(s) 66, 103, 153
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 63, 100, 150
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 329
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 3 cut(s) 4, 253, 466
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 2 cut(s) 98, 238
CviJI RGCY 9 cut(s) 32, 107, 145, 157, 205, 254, 283, 360, 397
CviKI_1 RGCY 9 cut(s) 32, 107, 145, 157, 205, 254, 283, 360, 397
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 60, 206, 329
DpnI GATC 3 cut(s) 65, 102, 152
DpnII GATC 3 cut(s) 63, 100, 150
Eco130I CCWWGG 1 cut(s) 267
Eco32I GATATC 2 cut(s) 325, 382
Eco47I GGWCC 2 cut(s) 4, 466
Eco81I CCTNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 253
EcoRV GATATC 2 cut(s) 325, 382
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 101, 241
FaiI YATR 6 cut(s) 9, 99, 132, 239, 405, 410
FatI CATG 2 cut(s) 97, 237
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 104, 362
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 199
Hin1II CATG 2 cut(s) 101, 241
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 445
HpaII CCGG 1 cut(s) 199
HphI GGTGA 2 cut(s) 58, 67
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 373, 450
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 56, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 60, 206, 329
Hsp92II CATG 2 cut(s) 101, 241
Kzo9I GATC 3 cut(s) 63, 100, 150
LmnI GCTCC 2 cut(s) 94, 457
LpnPI CCDG 8 cut(s) 13, 27, 91, 167, 212, 269, 293, 341
MaeI CTAG 2 cut(s) 104, 362
MalI GATC 3 cut(s) 65, 102, 152
MbiI CCGCTC 1 cut(s) 286
MboI GATC 3 cut(s) 63, 100, 150
MboII GAAGA 3 cut(s) 208, 346, 349
MflI RGATCY 1 cut(s) 150
MluCI AATT 2 cut(s) 123, 177
MnlI CCTC 8 cut(s) 79, 83, 175, 178, 195, 235, 324, 401
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 147, 315
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 63, 100, 150
NlaIII CATG 2 cut(s) 101, 241
NlaIV GGNNCC 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 3 cut(s) 4, 253, 466
PstI CTGCAG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 147, 315
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 63, 100, 150
Sau96I GGNCC 3 cut(s) 4, 253, 466
SetI ASST 4 cut(s) 80, 147, 159, 246
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 2 cut(s) 4, 466
SmlI CTYRAG 2 cut(s) 146, 392
SmoI CTYRAG 2 cut(s) 146, 392
Sse9I AATT 2 cut(s) 123, 177
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 104, 362
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 321
TasI AATT 2 cut(s) 123, 177
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 2 cut(s) 147, 315
Tru9I TTAA 2 cut(s) 147, 315
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 340
TspRI CASTG 1 cut(s) 46
Vha464I CTTAAG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 4, 466
XapI RAATTY 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 2 cut(s) 104, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.