MD13G1205700.v1.1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000511
Physical Location & Seq
Forward (+)
18657460 .. 18658542
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1205700.v1.1.491

Sequence Viewer

Length: 489 bp
ATGTCTGACCAGAAAATCTTGGGAACAAATTTATGGTACTCATGTTCATGTTATGCTATGAATCCTTTGATGATGATTCTCTTTTCGGCAATCACCGAAAATATCCTTAAGCGTGCTACCCAAATTGTTGACAAAATTGTGCAGGGTACCCAAGTGCACGTGGAGAACATAGAGGAGAACACACCCAAAGCAGGCTTCAGTGCACCATTGTGCACACTAAAGTCCATAGCCAGCGAGATGCAATGCAAGCCTCCTAGTGAGGAAGTTGCCCACAACACAACCCTGGCCATACTGAACAAGCTATCAAGCTATTCATGGGAAGCAAAGGCAGTGCTGACTCTAGCAGCTTTTGCCATGGAATACGGGGAGTTCTGGCTCCTCGCCCAGCTTCAAGAATCAGACCGACTCGCCAAATCAATTGCAATCCTGAAGCGAGTCCCCGTGCTCCTCAAGCCTCGACCTGCACAAGAAAAGACAAGCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

7.64

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 30 - 153 3e-45 Sieve element occlusion N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000511)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g02370 FvH4_4g02370 FvH4_4g02370 FvH4_4g02430 FvH4_4g02430 FvH4_4g02460 FvH4_4g02460 FvH4_4g02460 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_4g02480 FvH4_6g05920
malus_domestica MD00G1111000.v1.1 MD08G1225800.v1.1 MD13G1205700.v1.1 MD13G1205800.v1.1 MD13G1205900.v1.1 MD13G1206000.v1.1 MD16G1207500.v1.1 MD16G1207600.v1.1
prunus_persica Prupe.1G028400_v2.0.a1 Prupe.1G028500_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028800_v2.0.a1 Prupe.1G028900_v2.0.a1 Prupe.1G029000_v2.0.a1 Prupe.1G029100_v2.0.a1
pyrus_communis pycom08g19680 pycom08g19730 pycom16g17460 pycom16g17500
rosa_chinensis RchiOBHm_Chr4g0389751 RchiOBHm_Chr4g0389771 RchiOBHm_Chr4g0389791 RchiOBHm_Chr4g0389861 RchiOBHm_Chr4g0389881 RchiOBHm_Chr4g0389901 RchiOBHm_Chr4g0412411
rosa_laevigata RLG00000008288 RLG00000009901 RLG00000009945 RLG00000009954 RLG00000009956 RLG00000009957 RLG00000009958 RLG00000019246
rosa_multiflora Rmu_co8275125.1_g000001 Rmu_sc0002083.1_g000003 Rmu_sc0002083.1_g000025 Rmu_sc0002604.1_g000016 Rmu_sc0004336.1_g000031 Rmu_sc0010423.1_g000003
rosa_roxburghii Rroxscaffold_5G00335790 Rroxscaffold_5G00335850 Rroxscaffold_5G00335970 Rroxscaffold_5G00335990
rosa_rugosa Rorug03G0325100 Rorug03G0325300 Rorug03G0325500.1 Rorug03G0326800 Rorug03G0327000 Rorug04G0104400
rosa_samantha Rh4AG029900 Rh4AG030000 Rh4AG030100 Rh4AG030200 Rh4AG030600 Rh4AG172900 Rh4BG023200 Rh4BG023900 Rh4BG024000 Rh4BG024100 Rh4BG172200 Rh4DG023300 Rh4DG023800 Rh4DG023900 Rh4DG024000 Rh4DG151600
rosa_wichuraiana Rw1G002330 Rw1G002340 Rw4G002260 Rw4G002270 Rw4G002280 Rw4G002300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 181, 449
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 2 cut(s) 38, 148
AfiI CCNNNNNNNGG 1 cut(s) 191
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 282
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 4 cut(s) 301, 309, 347, 388
AluI AGCT 4 cut(s) 301, 309, 347, 388
Alw21I GWGCWC 4 cut(s) 159, 205, 215, 447
Alw44I GTGCAC 3 cut(s) 155, 201, 211
AoxI GGCC 1 cut(s) 285
ApaLI GTGCAC 3 cut(s) 155, 201, 211
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 85
BaeGI GKGCMC 3 cut(s) 159, 205, 215
BaeI ACNNNNGTAYC 4 cut(s) 28, 61, 138, 171
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 160
Bbv12I GWGCWC 4 cut(s) 159, 205, 215, 447
BbvI GCAGC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 284
BfaI CTAG 2 cut(s) 255, 341
BfrI CTTAAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 148, 377
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 282, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 282, 354
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 248
BseRI GAGGAG 3 cut(s) 188, 368, 437
BseSI GKGCMC 3 cut(s) 159, 205, 215
BseXI GCAGC 1 cut(s) 356
BseYI CCCAGC 1 cut(s) 384
BsgI GTGCAG 2 cut(s) 161, 447
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 4 cut(s) 159, 205, 215, 447
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 4 cut(s) 159, 205, 215, 447
Bsp19I CCATGG 1 cut(s) 354
BspANI GGCC 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 148, 377
BspMI ACCTGC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 146
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 282, 354
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 114, 193, 232, 248
BstDSI CCRYGG 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 247, 350, 451
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 3 cut(s) 159, 205, 215
BstV1I GCAGC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 354
BtsI GCAGTG 2 cut(s) 336, 487
BtsIMutI CAGTG 3 cut(s) 205, 336, 487
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 4 cut(s) 114, 193, 232, 248
Csp6I GTAC 2 cut(s) 37, 147
CviAII CATG 4 cut(s) 42, 48, 315, 355
CviQI GTAC 2 cut(s) 37, 147
EaeI YGGCCR 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 181, 449
Eco72I CACGTG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 45, 51, 318, 358
FalI AAGNNNNNCTT 1 cut(s) 469
FaqI GGGAC 1 cut(s) 422
FatI CATG 4 cut(s) 41, 47, 314, 354
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 2 cut(s) 255, 341
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 388
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 4 cut(s) 45, 51, 318, 358
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 6 cut(s) 61, 76, 337, 395, 405, 435
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 130, 157, 203, 213
Hpy188I TCNGA 2 cut(s) 7, 400
Hpy188III TCNNGA 2 cut(s) 392, 427
Hpy8I GTNNAC 4 cut(s) 130, 157, 203, 213
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 8 cut(s) 142, 157, 203, 213, 241, 246, 422, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 350, 451
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 45, 51, 318, 358
KpnI GGTACC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 381, 450
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 255, 341
MaeII ACGT 1 cut(s) 159
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 4 cut(s) 159, 205, 215, 447
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 4 cut(s) 28, 123, 135, 417
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 3 cut(s) 331, 399, 444
MnlI CCTC 6 cut(s) 166, 253, 261, 389, 458, 465
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 46, 208
Msp20I TGGCCA 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 284
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 247, 350, 451
NcoI CCATGG 1 cut(s) 354
NlaIII CATG 4 cut(s) 45, 51, 318, 358
NlaIV GGNNCC 2 cut(s) 148, 377
OliI CACNNNNGTG 1 cut(s) 208
PfeI GAWTC 3 cut(s) 61, 76, 395
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 3 cut(s) 331, 399, 443
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 3 cut(s) 331, 399, 443
Ppu21I YACGTR 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 282
PspCI CACGTG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 148, 377
RsaI GTAC 2 cut(s) 38, 148
RsaNI GTAC 2 cut(s) 37, 147
RseI CAYNNNNRTG 2 cut(s) 46, 208
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 345
SchI GAGTC 3 cut(s) 331, 399, 444
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 4 cut(s) 159, 205, 215, 447
SetI ASST 6 cut(s) 162, 303, 311, 349, 390, 463
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 46, 208
SmlI CTYRAG 2 cut(s) 107, 449
SmoI CTYRAG 2 cut(s) 107, 449
Sse9I AATT 4 cut(s) 28, 123, 135, 417
SspMI CTAG 2 cut(s) 255, 341
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 457
TaqII GACCGA 1 cut(s) 417
TasI AATT 4 cut(s) 28, 123, 135, 417
TfiI GAWTC 3 cut(s) 61, 76, 395
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 3 cut(s) 205, 336, 487
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 36, 74, 303
TspRI CASTG 3 cut(s) 205, 336, 487
Vha464I CTTAAG 1 cut(s) 107
VneI GTGCAC 3 cut(s) 155, 201, 211
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 255, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.