FvH4_4g05231

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000377
Physical Location & Seq
Forward (+)
4489706 .. 4490687
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05231.t1

Sequence Viewer

Length: 543 bp
ATGACAATGTGTAATGGCTCCATGCCCTTGTCCTTTCTCTACAGCCCTTTTATTATTCGGAGGCTGTGGAAATCGGTTCTAACAGCTTTGGGCCTGCTTTTTTTTGTCAGCCCAATCTACAAGCTCCGCCTTGGCACCAAGCTCGCTGTCATCATCACCTCCCCCTCCCTCGTCCGCCAGGTCCTCAAGGACCATGACGTCATCTTCGCCAACCACGACGTCCCTGTTGCCGGCCTGGCCGCCACGTACGGCGGTTTCGACATCGCCTGGACCCCGTACGGCCCCGAGTGGTGGATGCTGCGGAAGGTTTGCGTGCTCCAGATGCTCAGCAAGACCACGCTCGACTCCGTCCACGATCTCCTCCGCAAGCAGGTCCGGCCAACGGTGGGGTTCTTCTACGGCCGGGTCAAGTCGTCGGTGAACGTGGGGGAGCAGATGTTTCTGAACACACTGAACGTGGTTACCAACATGCTGTGGGGCGGAACTGTGAGGGAGGAGGCACCTGGCTCGGGAGGTAGTTCCGGGAAGTGCTATCGGAGATAA

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

9.86

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 160 7.2e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AatII GACGTC 2 cut(s) 201, 222
Acc36I ACCTGC 1 cut(s) 361
AccB1I GGYRCC 2 cut(s) 134, 499
AciI CCGC 7 cut(s) 127, 175, 240, 252, 301, 364, 480
AcoI YGGCCR 3 cut(s) 237, 377, 400
AcyI GRCGYC 2 cut(s) 198, 219
AfaI GTAC 2 cut(s) 248, 278
AfiI CCNNNNNNNGG 6 cut(s) 230, 291, 370, 382, 386, 509
AjnI CCWGG 4 cut(s) 177, 234, 266, 502
AluBI AGCT 3 cut(s) 86, 124, 142
AluI AGCT 3 cut(s) 86, 124, 142
Alw21I GWGCWC 1 cut(s) 318
Ama87I CYCGRG 2 cut(s) 284, 508
AoxI GGCC 6 cut(s) 91, 232, 237, 280, 377, 400
ApeKI GCWGC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspS9I GGNCC 6 cut(s) 91, 181, 190, 270, 281, 373
AsuC2I CCSGG 2 cut(s) 404, 523
AsuHPI GGTGA 2 cut(s) 148, 430
AvaI CYCGRG 2 cut(s) 284, 508
AvaII GGWCC 4 cut(s) 181, 190, 270, 373
BanI GGYRCC 2 cut(s) 134, 499
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 285
BceAI ACGGC 3 cut(s) 265, 295, 415
BcgI CGANNNNNNTGC 4 cut(s) 124, 158, 489, 523
BciT130I CCWGG 4 cut(s) 179, 236, 268, 504
BcnI CCSGG 2 cut(s) 404, 523
BfmI CTRYAG 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 2 cut(s) 240, 299
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 241, 300
Bme1390I CCNGG 6 cut(s) 179, 236, 268, 404, 504, 523
Bme18I GGWCC 4 cut(s) 181, 190, 270, 373
BmeT110I CYCGRG 2 cut(s) 284, 508
BmgT120I GGNCC 6 cut(s) 91, 181, 190, 270, 281, 373
BmiI GGNNCC 5 cut(s) 19, 136, 272, 283, 501
BmrFI CCNGG 6 cut(s) 179, 236, 268, 404, 504, 523
BmsI GCATC 2 cut(s) 285, 312
BpmI CTGGAG 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 404, 523
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 198, 219
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 291, 370, 382, 386, 509
Bse118I RCCGGY 1 cut(s) 230
BseBI CCWGG 4 cut(s) 179, 236, 268, 504
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 6 cut(s) 230, 291, 370, 382, 386, 509
BseMII CTCAG 1 cut(s) 340
BseRI GAGGAG 2 cut(s) 350, 509
BseX3I CGGCCG 1 cut(s) 400
BseXI GCAGC 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 6 cut(s) 93, 234, 239, 282, 379, 402
BshNI GGYRCC 2 cut(s) 134, 499
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 2 cut(s) 284, 508
BsiSI CCGG 4 cut(s) 231, 376, 403, 522
BsiWI CGTACG 2 cut(s) 246, 276
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 6 cut(s) 230, 291, 370, 382, 386, 509
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 6 cut(s) 93, 234, 239, 282, 379, 402
BsoBI CYCGRG 2 cut(s) 284, 508
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 355
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 7 cut(s) 127, 175, 240, 252, 301, 364, 480
BspANI GGCC 6 cut(s) 93, 234, 239, 282, 379, 402
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 5 cut(s) 19, 136, 272, 283, 501
BspMI ACCTGC 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 134, 499
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 2 cut(s) 198, 219
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 4 cut(s) 179, 236, 268, 504
Bst4CI ACNGT 2 cut(s) 385, 487
BstACI GRCGYC 2 cut(s) 198, 219
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 5 cut(s) 95, 144, 232, 314, 368
BstDEI CTNAG 1 cut(s) 326
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 236, 322, 376
BstNI CCWGG 4 cut(s) 179, 236, 268, 504
BstNSI RCATGY 1 cut(s) 472
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 6 cut(s) 177, 234, 266, 402, 502, 521
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 285
BstZI CGGCCG 1 cut(s) 400
BsuRI GGCC 6 cut(s) 93, 234, 239, 282, 379, 402
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 449
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 5 cut(s) 95, 144, 232, 314, 368
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 6 cut(s) 91, 181, 190, 270, 281, 373
Csp6I GTAC 2 cut(s) 247, 277
CviAII CATG 3 cut(s) 22, 194, 469
CviQI GTAC 2 cut(s) 247, 277
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 3 cut(s) 237, 377, 400
EagI CGGCCG 1 cut(s) 400
EciI GGCGGA 3 cut(s) 116, 164, 495
EclXI CGGCCG 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 130
Eco47I GGWCC 4 cut(s) 181, 190, 270, 373
Eco52I CGGCCG 1 cut(s) 400
Eco88I CYCGRG 2 cut(s) 284, 508
Eco91I GGTNACC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 4 cut(s) 177, 234, 266, 502
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 25, 197, 472
FaiI YATR 3 cut(s) 23, 195, 470
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 21, 193, 468
Fnu4HI GCNGC 2 cut(s) 240, 299
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 240, 299
GluI GCNGC 2 cut(s) 240, 299
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 6 cut(s) 93, 234, 239, 282, 379, 402
HapII CCGG 4 cut(s) 231, 376, 403, 522
Hin1I GRCGYC 2 cut(s) 198, 219
Hin1II CATG 3 cut(s) 25, 197, 472
HinfI GANTC 1 cut(s) 344
HpaII CCGG 4 cut(s) 231, 376, 403, 522
HphI GGTGA 2 cut(s) 148, 430
Hpy166II GTNNAC 2 cut(s) 352, 421
Hpy188I TCNGA 3 cut(s) 60, 444, 537
Hpy188III TCNNGA 2 cut(s) 319, 510
Hpy8I GTNNAC 2 cut(s) 352, 421
Hpy99I CGWCG 2 cut(s) 221, 418
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 385, 487
HpyCH4IV ACGT 5 cut(s) 198, 219, 245, 423, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 322, 376
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 5 cut(s) 198, 219, 245, 423, 456
Hsp92I GRCGYC 2 cut(s) 198, 219
Hsp92II CATG 3 cut(s) 25, 197, 472
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 4 cut(s) 23, 129, 321, 430
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 285, 312
MaeII ACGT 5 cut(s) 198, 219, 245, 423, 456
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 196, 385
MhlI GDGCHC 1 cut(s) 318
MlyI GAGTC 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 230
MspI CCGG 4 cut(s) 231, 376, 403, 522
MspR9I CCNGG 6 cut(s) 179, 236, 268, 404, 504, 523
MvaI CCWGG 4 cut(s) 179, 236, 268, 504
MwoI GCNNNNNNNGC 3 cut(s) 236, 322, 376
NaeI GCCGGC 1 cut(s) 232
NciI CCSGG 2 cut(s) 404, 523
NdeII GATC 1 cut(s) 355
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 3 cut(s) 25, 197, 472
NlaIV GGNNCC 5 cut(s) 19, 136, 272, 283, 501
NspI RCATGY 1 cut(s) 472
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 255
PdiI GCCGGC 1 cut(s) 232
Pfl23II CGTACG 2 cut(s) 246, 276
PflFI GACNNNGTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 521
PkrI GCNGC 2 cut(s) 241, 300
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 4 cut(s) 177, 234, 266, 502
PspEI GGTNACC 1 cut(s) 460
PspGI CCWGG 4 cut(s) 177, 234, 266, 502
PspLI CGTACG 2 cut(s) 246, 276
PspN4I GGNNCC 5 cut(s) 19, 136, 272, 283, 501
PspPI GGNCC 6 cut(s) 91, 181, 190, 270, 281, 373
PspPPI RGGWCCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 2 cut(s) 248, 278
RsaNI GTAC 2 cut(s) 247, 277
SatI GCNGC 2 cut(s) 240, 299
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 6 cut(s) 91, 181, 190, 270, 281, 373
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 6 cut(s) 179, 236, 268, 404, 504, 523
SduI GDGCHC 1 cut(s) 318
SfaNI GCATC 2 cut(s) 285, 312
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 4 cut(s) 181, 190, 270, 373
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 7 cut(s) 127, 175, 240, 252, 301, 364, 480
StyD4I CCNGG 6 cut(s) 177, 234, 266, 402, 502, 521
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 385, 487
TaiI ACGT 5 cut(s) 201, 222, 248, 426, 459
TaqI TCGA 2 cut(s) 258, 342
TauI GCSGC 1 cut(s) 242
TscAI CASTG 1 cut(s) 456
TseI GCWGC 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 4 cut(s) 181, 190, 270, 373
XceI RCATGY 1 cut(s) 472
ZraI GACGTC 2 cut(s) 199, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.