Rh7DG020100

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000377
Physical Location & Seq
Forward (+)
1627457 .. 1627831
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG020100.1

Sequence Viewer

Length: 375 bp
ATGCCGTGTTTGTTATTGTGTAATTACGACGCGTTTGGAGTATTGCCGTCTTTTTGTAATCAAAACAGCTACGAAATTTGGCCAGAAGTTAAATCTCCTTCTCAGTCCATCCCTCACTCTTATCTTTCTCTCTCTGTCGAAAGCTTCGAGAAATCTCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCTGTCTCCGAGATCACACCCCCTCAGCTCTCCAACCTCTCAATTGTCAAATTCGCCTCCACCTTCTCCTTCGCCTCCGCCTTCGCTAGTGAGCCATCGGAGGCGGAGCTCCAGAAGTTCGGTGTCTCCGACGATATATATCAGAGACTTTGTCAAGGGACTCACTTCCGAATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

5.24

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 177, 273, 299
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 3 cut(s) 75, 245, 366
AflIII ACRYGT 1 cut(s) 30
AluBI AGCT 5 cut(s) 69, 144, 171, 223, 304
AluI AGCT 5 cut(s) 69, 144, 171, 223, 304
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 205, 325, 334
AoxI GGCC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 75, 245, 366
BalI TGGCCA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 116, 298
BceAI ACGGC 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 205, 325, 334
BfaI CTAG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 333
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 2 cut(s) 116, 233
BseRI GAGGAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 205, 325, 334
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 3 cut(s) 177, 273, 299
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 115, 232
BspFNI CGCG 1 cut(s) 32
BssMI GATC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 102, 219
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 3 cut(s) 205, 325, 334
BstMBI GATC 1 cut(s) 207
BstUI CGCG 1 cut(s) 32
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 108
CseI GACGC 1 cut(s) 38
CviJI RGCY 7 cut(s) 69, 82, 144, 171, 223, 289, 304
CviKI_1 RGCY 7 cut(s) 69, 82, 144, 171, 223, 289, 304
DdeI CTNAG 2 cut(s) 102, 219
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 80
EciI GGCGGA 3 cut(s) 166, 262, 314
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 306
FaiI YATR 2 cut(s) 332, 334
FaqI GGGAC 1 cut(s) 367
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 82
HgaI GACGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 205, 295, 325, 339, 365
Hpy188III TCNNGA 2 cut(s) 148, 307
Hpy99I CGWCG 2 cut(s) 32, 329
HpyAV CCTTC 4 cut(s) 108, 268, 274, 286
HpyF3I CTNAG 2 cut(s) 102, 219
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 3 cut(s) 176, 301, 309
LpnPI CCDG 3 cut(s) 96, 181, 320
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 189
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 5 cut(s) 22, 75, 237, 245, 366
MluI ACGCGT 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 82
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 252, 348
MnlI CCTC 7 cut(s) 123, 184, 228, 242, 262, 280, 289
Mox20I TGGCCA 1 cut(s) 82
MscI TGGCCA 1 cut(s) 82
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 82
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 32
NdeII GATC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 321
PflFI GACNNNGTC 1 cut(s) 345
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 345
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 71, 146, 173, 225, 234, 260, 306
Sse9I AATT 5 cut(s) 22, 75, 237, 245, 366
SsiI CCGC 3 cut(s) 177, 273, 299
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 306
TaqI TCGA 2 cut(s) 138, 147
TasI AATT 5 cut(s) 22, 75, 237, 245, 366
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 345
XapI RAATTY 3 cut(s) 75, 245, 366
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.