Rh4AG183200

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000377
Physical Location & Seq
Reverse (-)
45562851 .. 45573801
10951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG183200.1

Sequence Viewer

Length: 570 bp
ATGTTCCGGAGGCTCCCGGTGTGCCACCCCTTCTTGTTCAGAAACTTCAACGCCATTACGACGTCGCACTACTACACAAAACAGGGACAGTGGTGGGCACTCACATTTTTTAATTACTTGTTAGTTAACGACGCAGAATTGCGCGCCGTAAATGATATCGTCTCCGAGATCACACTCCCTCAGCCCTCCAACCTCTCGATTGTCAAATCCGCCTCCGCCAGTGTGCCATCCAAGGCGGAGCTCCAGAAGTTCGGCCTCTCCGACGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGAATTTTTGATTCAGATCTTCAAATGCGCACCATTTCGATCGAATAGTCGACTCTCTCTAATCCTTCCTGCTCTGCACTTCGCTCCTCGCAGCTCAGTTCGAGGTTTTAGGAAAGATTTGATGGAGTGGCGGGAGCGACATACATGCCACTTTGGTCTTATCTTTGTTGAAGACAGCAATAACAAAGACCGTGTTGTTGAGGCAAGGGATGGATTGCACAGGATGTCAAATGAGATCATATCACTGAATAGTAGCAGAGCATATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

189

Amino Acids

21.85

Weight (kDa)

9.3

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
Acc16I TGCGCA 1 cut(s) 328
AccI GTMKAC 1 cut(s) 349
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 4 cut(s) 210, 216, 236, 430
AcsI RAATTY 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 62
AgsI TTSAA 3 cut(s) 49, 322, 470
AluBI AGCT 2 cut(s) 241, 393
AluI AGCT 2 cut(s) 241, 393
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 166, 270
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 390
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 3 cut(s) 144, 146, 329
AsuC2I CCSGG 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 402
BccI CCATC 3 cut(s) 235, 415, 503
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 166, 270
BglII AGATCT 1 cut(s) 315
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 227, 514, 528
BseJI GATNNNNATC 1 cut(s) 314
BseMII CTCAG 3 cut(s) 194, 286, 408
BseNI ACTGG 1 cut(s) 219
BsePI GCGCGC 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 2 cut(s) 7, 17
BslFI GGGAC 2 cut(s) 99, 303
BsmAI GTCTC 2 cut(s) 166, 270
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 99, 303
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 100, 243
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 5 cut(s) 168, 268, 315, 338, 534
BspACI CCGC 4 cut(s) 210, 216, 236, 430
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 193, 285, 407
BspEI TCCGGA 1 cut(s) 6
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 231
BssHII GCGCGC 1 cut(s) 142
BssMI GATC 5 cut(s) 168, 268, 315, 338, 534
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 90, 491
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 180, 272, 394
BstF5I GGATG 3 cut(s) 227, 514, 528
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 3 cut(s) 144, 146, 329
BstKTI GATC 5 cut(s) 171, 271, 318, 341, 537
BstMAI GTCTC 2 cut(s) 166, 270
BstMBI GATC 5 cut(s) 168, 268, 315, 338, 534
BstMCI CGRYCG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 100
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 227, 514, 528
BtsIMutI CAGTG 3 cut(s) 95, 226, 542
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 3 cut(s) 144, 146, 329
CseI GACGC 1 cut(s) 140
CviAII CATG 1 cut(s) 444
CviJI RGCY 5 cut(s) 13, 184, 241, 255, 393
CviKI_1 RGCY 5 cut(s) 13, 184, 241, 255, 393
DdeI CTNAG 3 cut(s) 180, 272, 394
DpnI GATC 5 cut(s) 170, 270, 317, 340, 536
DpnII GATC 5 cut(s) 168, 268, 315, 338, 534
EciI GGCGGA 3 cut(s) 199, 205, 251
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 447
FaiI YATR 4 cut(s) 441, 445, 539, 562
FaqI GGGAC 2 cut(s) 99, 303
FatI CATG 1 cut(s) 443
FauI CCCGC 1 cut(s) 423
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 3 cut(s) 214, 521, 535
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 391
FspAI RTGCGCAY 1 cut(s) 328
FspI TGCGCA 1 cut(s) 328
GlaI GCGC 3 cut(s) 143, 145, 328
GluI GCNGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 7, 17
HgaI GACGC 1 cut(s) 140
HhaI GCGC 3 cut(s) 144, 146, 329
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 447
Hin6I GCGC 3 cut(s) 142, 144, 327
HinP1I GCGC 3 cut(s) 142, 144, 327
HincII GTYRAC 2 cut(s) 127, 350
HindII GTYRAC 2 cut(s) 127, 350
HinfI GANTC 3 cut(s) 291, 310, 351
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 2 cut(s) 7, 17
Hpy166II GTNNAC 2 cut(s) 127, 350
Hpy188I TCNGA 6 cut(s) 41, 166, 262, 275, 301, 315
Hpy188III TCNNGA 3 cut(s) 7, 196, 244
Hpy8I GTNNAC 2 cut(s) 127, 350
Hpy99I CGWCG 5 cut(s) 64, 67, 134, 266, 269
HpyAV CCTTC 2 cut(s) 40, 374
HpyCH4III ACNGT 2 cut(s) 90, 491
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 376, 517
HpyF3I CTNAG 3 cut(s) 180, 272, 394
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 447
HspAI GCGC 3 cut(s) 142, 144, 327
Kpn2I TCCGGA 1 cut(s) 6
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 5 cut(s) 168, 268, 315, 338, 534
LmnI GCTCC 5 cut(s) 18, 238, 246, 388, 433
LpnPI CCDG 7 cut(s) 20, 30, 68, 232, 257, 381, 505
Lsp1109I GCAGC 1 cut(s) 402
MaeII ACGT 1 cut(s) 62
MalI GATC 5 cut(s) 170, 270, 317, 340, 536
MboI GATC 5 cut(s) 168, 268, 315, 338, 534
MboII GAAGA 2 cut(s) 310, 482
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 100, 243
MluCI AATT 3 cut(s) 112, 137, 302
MlyI GAGTC 2 cut(s) 285, 345
MmeI TCCRAC 2 cut(s) 213, 285
MnlI CCTC 9 cut(s) 3, 189, 196, 203, 223, 266, 395, 396, 493
MroI TCCGGA 1 cut(s) 6
MseI TTAA 3 cut(s) 111, 126, 568
MspI CCGG 2 cut(s) 7, 17
MspR9I CCNGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 144
NciI CCSGG 1 cut(s) 17
NdeII GATC 5 cut(s) 168, 268, 315, 338, 534
NlaIII CATG 1 cut(s) 447
NlaIV GGNNCC 1 cut(s) 14
NsbI TGCGCA 1 cut(s) 328
NspI RCATGY 1 cut(s) 447
PauI GCGCGC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 392
Ple19I CGATCG 1 cut(s) 341
PleI GAGTC 2 cut(s) 285, 345
PpsI GAGTC 2 cut(s) 285, 345
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 281
PteI GCGCGC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 243
SalI GTCGAC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 111, 126, 568
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 5 cut(s) 168, 268, 315, 338, 534
SchI GAGTC 2 cut(s) 285, 345
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 100, 243
SetI ASST 5 cut(s) 65, 195, 243, 395, 406
Sse9I AATT 3 cut(s) 112, 137, 302
SsiI CCGC 4 cut(s) 210, 216, 236, 430
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 90, 491
TaiI ACGT 1 cut(s) 65
TaqI TCGA 5 cut(s) 197, 337, 341, 349, 400
TasI AATT 3 cut(s) 112, 137, 302
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 3 cut(s) 111, 126, 568
Tru9I TTAA 3 cut(s) 111, 126, 568
TscAI CASTG 3 cut(s) 95, 226, 549
TseI GCWGC 1 cut(s) 390
TspRI CASTG 3 cut(s) 95, 226, 549
Tth111I GACNNNGTC 1 cut(s) 281
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 349
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.