RchiOBHm_Chr7g0201981

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000377
Physical Location & Seq
Reverse (-)
19675130 .. 19676815
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18080

Sequence Viewer

Length: 807 bp
ATGAAGGATGTGGAGCTTAGGTTTGATAGGATTTTTGAGAAAGTTATCAATCAAAGGTTGACGATGCAGAAAGAAGGCGCGAAAGAGAGCAATGATTTCTTGACATTTCTATTGCGATCTATAGATGAAGGAGGAGACGGCAAAACTCCTCTGACCATGACACATCTCAAAGCCATGCTCTTGGATATGGTTGTGGGTAGTACTGACACATCCGCCACCACAATTGAGTTTGCAATGGCTGAAATTATGAACAAACCAGTGGTGTTACAGAAAGCCCTGAAAGAATTAGACGTTGTAGTTGGGAAAGACAGTATTGTACAAGAGTCTCATATTCACAAACTACCATACCTGGATGCTGTGATGAAAGAAACTCTGCGCTTGCACCCAGCCCTGCCTGTATTAATTCCACATTGTCCAAGTGAAACATGCACTGTGGGAGGTTATACCATTCCAAAGGGGTCTAGGATTTTTGTTAATGTGTGGGATATCCATAGAGACTCTTCTAACTGGAAAAACCCATTAGAGTTTAATCCAGAGAGGTTCTTGAATGGTAAGTATGACTACACTGGAAGTGACTTCAACTATTTTCCATTTGGGAGTGGAAAAAGAATATGTCCGGGGATAGCAACGGCAGAGAGGCTTGTCATGCATTTACTTGCATCACTGTTGCATTCTTTTGACTGGAAACTACCACAAGGAGAGACGAAGTTAGATGTTTCCGAGAAGTTTGGCCTTGTGATGAAGAAGAAGGTACCTATGGTTGCCATCCCAACTCCAAGGTTATTGGATTCAGAACTTTATCAGTAA

Protein Analysis

268

Amino Acids

30.31

Weight (kDa)

6.72

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 251 6.9e-69 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 751
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 213
AfaI GTAC 3 cut(s) 202, 318, 753
AgsI TTSAA 2 cut(s) 547, 580
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 4 cut(s) 129, 330, 489, 695
AoxI GGCC 1 cut(s) 730
AseI ATTAAT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 751
AspLEI GCGC 2 cut(s) 80, 378
AsuC2I CCSGG 1 cut(s) 618
BanI GGYRCC 1 cut(s) 751
BccI CCATC 1 cut(s) 773
BceAI ACGGC 2 cut(s) 154, 645
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 4 cut(s) 129, 330, 489, 695
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 350, 618
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 2 cut(s) 350, 618
BmsI GCATC 3 cut(s) 54, 343, 668
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 617, 776
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bse1I ACTGG 4 cut(s) 257, 512, 571, 686
Bse3DI GCAATG 2 cut(s) 97, 240
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 617, 776
BseGI GGATG 4 cut(s) 13, 209, 358, 765
BseMI GCAATG 2 cut(s) 97, 240
BseNI ACTGG 4 cut(s) 257, 512, 571, 686
BseRI GAGGAG 2 cut(s) 138, 147
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 732
BshNI GGYRCC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 617
BsmAI GTCTC 4 cut(s) 129, 330, 489, 695
BsmBI CGTCTC 2 cut(s) 129, 695
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 1 cut(s) 732
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 732
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 753
BspT107I GGYRCC 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 97, 240
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 4 cut(s) 257, 512, 571, 686
BssECI CCNNGG 2 cut(s) 617, 776
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 311, 433, 666
Bst6I CTCTTC 1 cut(s) 505
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 4 cut(s) 13, 209, 358, 765
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 80, 378
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 4 cut(s) 129, 330, 489, 695
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 646
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 348, 616
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 1 cut(s) 732
BtsCI GGATG 4 cut(s) 13, 209, 358, 765
BtsIMutI CAGTG 4 cut(s) 264, 429, 564, 662
Cac8I GCNNGC 1 cut(s) 380
CfoI GCGC 2 cut(s) 80, 378
Csp6I GTAC 3 cut(s) 201, 317, 752
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 4 cut(s) 157, 175, 426, 646
CviJI RGCY 7 cut(s) 16, 173, 239, 275, 389, 640, 732
CviKI_1 RGCY 7 cut(s) 16, 173, 239, 275, 389, 640, 732
CviQI GTAC 3 cut(s) 201, 317, 752
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 776
Eco32I GATATC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 776
EcoT22I ATGCAT 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 776
Esp3I CGTCTC 2 cut(s) 129, 695
FaeI CATG 4 cut(s) 160, 178, 429, 649
FatI CATG 4 cut(s) 156, 174, 425, 645
FokI GGATG 4 cut(s) 20, 196, 365, 752
FspBI CTAG 1 cut(s) 462
GlaI GCGC 2 cut(s) 79, 377
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 1 cut(s) 732
HapII CCGG 1 cut(s) 617
HhaI GCGC 2 cut(s) 80, 378
Hin1II CATG 4 cut(s) 160, 178, 429, 649
Hin6I GCGC 2 cut(s) 78, 376
HinP1I GCGC 2 cut(s) 78, 376
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 323, 497, 788
HpaII CCGG 1 cut(s) 617
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 153, 721, 793
Hpy188III TCNNGA 3 cut(s) 100, 533, 544
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 68, 122, 742
HpyCH4III ACNGT 3 cut(s) 311, 433, 666
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 7 cut(s) 67, 233, 382, 429, 649, 659, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 646
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 160, 178, 429, 649
HspAI GCGC 2 cut(s) 78, 376
KpnI GGTACC 1 cut(s) 755
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 13
LweI GCATC 3 cut(s) 54, 343, 668
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 264, 572
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 3 cut(s) 492, 754, 757
MfeI CAATTG 1 cut(s) 222
MluCI AATT 4 cut(s) 222, 243, 284, 402
MlyI GAGTC 2 cut(s) 332, 491
MnlI CCTC 5 cut(s) 125, 159, 431, 531, 630
Mph1103I ATGCAT 1 cut(s) 651
MseI TTAA 3 cut(s) 401, 474, 528
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 350, 618
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 670
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 646
NciI CCSGG 1 cut(s) 618
NdeII GATC 1 cut(s) 116
NlaIII CATG 4 cut(s) 160, 178, 429, 649
NlaIV GGNNCC 1 cut(s) 753
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 429
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 1 cut(s) 788
PleI GAGTC 2 cut(s) 331, 491
PpsI GAGTC 2 cut(s) 331, 491
PshBI ATTAAT 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 753
RsaI GTAC 3 cut(s) 202, 318, 753
RsaNI GTAC 3 cut(s) 201, 317, 752
SaqAI TTAA 3 cut(s) 401, 474, 528
Sau3AI GATC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 2 cut(s) 332, 491
ScrFI CCNGG 2 cut(s) 350, 618
SfaNI GCATC 3 cut(s) 54, 343, 668
SfcI CTRYAG 1 cut(s) 120
Sse9I AATT 4 cut(s) 222, 243, 284, 402
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 348, 616
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 3 cut(s) 311, 433, 666
TaiI ACGT 1 cut(s) 294
TasI AATT 4 cut(s) 222, 243, 284, 402
TatI WGTACW 2 cut(s) 200, 316
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 3 cut(s) 401, 474, 528
Tru9I TTAA 3 cut(s) 401, 474, 528
TscAI CASTG 4 cut(s) 264, 436, 571, 669
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 5 cut(s) 17, 141, 263, 377, 755
TspRI CASTG 4 cut(s) 264, 436, 571, 669
VspI ATTAAT 1 cut(s) 401
XceI RCATGY 1 cut(s) 429
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.