Prupe.1G090700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000377
Physical Location & Seq
Forward (+)
6822990 .. 6823572
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G090700.1

Sequence Viewer

Length: 249 bp
ATGGCCACCGCAGTTGAAATTGCTCCCCAGAGAGTATGGCTATGTAGTCCTTGTTTCTTCTTCTCTACACTCTTCTCAGCCATTTTAGCAAGCATCTGGTGTGCATGGCTGTGCATAAAAAAAAAAAAAAAAACCACACCAACACCGAAGTCCTCAAACCGAAGTCCTCTGCATAAAGAAACAGAGCCTTCTGTTCTTTCTCACCTTCCTCTGCTCTCTCATCCACACCATACTCCAACCCATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.23

Weight (kDa)

9.56

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 17
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 194
BalI TGGCCA 1 cut(s) 5
BmsI GCATC 1 cut(s) 102
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 91
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 5, 40, 80, 109, 187
CviKI_1 RGCY 5 cut(s) 5, 40, 80, 109, 187
DdeI CTNAG 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
FaeI CATG 1 cut(s) 108
FaiI YATR 7 cut(s) 37, 43, 106, 116, 174, 231, 243
FatI CATG 1 cut(s) 104
FokI GGATG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 108
HphI GGTGA 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 198, 215
HpyCH4V TGCA 3 cut(s) 104, 114, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 1 cut(s) 108
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 41, 82
LweI GCATC 1 cut(s) 102
MboII GAAGA 3 cut(s) 49, 52, 64
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 18, 244
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 163, 177, 219
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 109
SetI ASST 1 cut(s) 207
SfaNI GCATC 1 cut(s) 102
SgeI CNNG 5 cut(s) 40, 63, 102, 109, 117
SmiMI CAYNNNNRTG 1 cut(s) 109
Sse9I AATT 2 cut(s) 18, 244
SsiI CCGC 1 cut(s) 9
TasI AATT 2 cut(s) 18, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.