RchiOBHm_Chr7g0178901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000377
Physical Location & Seq
Forward (+)
1400348 .. 1400830
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15943

Sequence Viewer

Length: 483 bp
ATGTGCGCGGTGAAACTTGCATTTTTAAATAATAAAGCAAAGCGTACAGTGAAGGCATGCCGTGTTTGTTATTGTGTAAATGTTTATTACGACGCGTTTGGAGTATTGCCGTCTTTTTGTAATCAAAACAGCTACGAAATTTGGCCAAAAGTTAAATCTCCTTCTCAGTCCATCCCTCAGTCCCTCACTCTTATCTTTCTCTCTCCGTCGAAAGCTTCGAGAAATCTCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCTGTCTCCGAGATCACACCCCCTCAGCTCTCCAACCTCTCAATTGTCAAATTCGCGTCCACCTTCTCCTTCGCCTCCGCCTTCGCTAGTGAGCCATCGGAGGCGGAGCTCCAGAAGTTCGGTGTCTCCGACGATATATATCAGAGACTTTGTCAAGGGACTCACTTCCGAATTTTTTGATTCGGTTCTTCAAATGCTCACCGTTTCAATCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.68

Weight (kDa)

10.09

Isoelectric Point (pI)

93.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 8, 95, 322
AciI CCGC 4 cut(s) 8, 248, 344, 370
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 3 cut(s) 138, 316, 437
AfaI GTAC 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 458, 474
AluBI AGCT 5 cut(s) 132, 215, 242, 294, 375
AluI AGCT 5 cut(s) 132, 215, 242, 294, 375
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 3 cut(s) 276, 396, 405
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 3 cut(s) 138, 316, 437
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 22, 457
BalI TGGCCA 1 cut(s) 145
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 179, 369
BceAI ACGGC 2 cut(s) 45, 94
BcoDI GTCTC 3 cut(s) 276, 396, 405
BfaI CTAG 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 404
BseGI GGATG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 404
BseMII CTCAG 3 cut(s) 179, 191, 304
BseRI GAGGAG 1 cut(s) 234
Bsh1236I CGCG 3 cut(s) 8, 95, 322
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 377
BslFI GGGAC 2 cut(s) 166, 438
BsmAI GTCTC 3 cut(s) 276, 396, 405
BsmFI GGGAC 2 cut(s) 166, 438
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 4 cut(s) 8, 248, 344, 370
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 3 cut(s) 178, 190, 303
BspFNI CGCG 3 cut(s) 8, 95, 322
BssMI GATC 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 49, 469
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 165, 177, 290
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 3 cut(s) 8, 95, 322
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 3 cut(s) 276, 396, 405
BstMBI GATC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 60
BstUI CGCG 3 cut(s) 8, 95, 322
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 8
CseI GACGC 2 cut(s) 101, 311
Csp6I GTAC 1 cut(s) 45
CviAII CATG 1 cut(s) 57
CviJI RGCY 7 cut(s) 132, 145, 215, 242, 294, 360, 375
CviKI_1 RGCY 7 cut(s) 132, 145, 215, 242, 294, 360, 375
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 3 cut(s) 165, 177, 290
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 143
EciI GGCGGA 3 cut(s) 237, 333, 385
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 1 cut(s) 60
FaiI YATR 3 cut(s) 58, 403, 405
FaqI GGGAC 2 cut(s) 166, 438
FatI CATG 1 cut(s) 56
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 377
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 2 cut(s) 101, 311
HhaI GCGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 426, 446
HphI GGTGA 2 cut(s) 22, 457
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 5 cut(s) 276, 366, 396, 410, 436
Hpy188III TCNNGA 2 cut(s) 219, 378
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 3 cut(s) 95, 211, 400
HpyAV CCTTC 5 cut(s) 46, 171, 339, 345, 357
HpyCH4III ACNGT 2 cut(s) 49, 469
HpyCH4V TGCA 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 165, 177, 290
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 3 cut(s) 247, 372, 380
LpnPI CCDG 2 cut(s) 252, 391
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 1 cut(s) 446
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 4 cut(s) 138, 308, 316, 437
MluI ACGCGT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 2 cut(s) 323, 419
MnlI CCTC 7 cut(s) 186, 194, 255, 299, 313, 351, 360
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 2 cut(s) 26, 153
Msp20I TGGCCA 1 cut(s) 145
MunI CAATTG 1 cut(s) 308
MvnI CGCG 3 cut(s) 8, 95, 322
NdeII GATC 1 cut(s) 278
NlaIII CATG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 2 cut(s) 215, 392
PfeI GAWTC 1 cut(s) 446
PflFI GACNNNGTC 1 cut(s) 416
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 377
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 26, 153
Sau3AI GATC 1 cut(s) 278
SchI GAGTC 1 cut(s) 420
SduI GDGCHC 1 cut(s) 377
SetI ASST 7 cut(s) 134, 217, 244, 296, 305, 331, 377
SphI GCATGC 1 cut(s) 60
Sse9I AATT 4 cut(s) 138, 308, 316, 437
SsiI CCGC 4 cut(s) 8, 248, 344, 370
SspMI CTAG 1 cut(s) 353
SstI GAGCTC 1 cut(s) 377
TaaI ACNGT 2 cut(s) 49, 469
TaqI TCGA 3 cut(s) 209, 218, 477
TasI AATT 4 cut(s) 138, 308, 316, 437
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 2 cut(s) 26, 153
Tru9I TTAA 2 cut(s) 26, 153
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 416
XapI RAATTY 3 cut(s) 138, 316, 437
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.