Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

49277409 .. 49279834

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGAATCCGATTCCTATTACGCTTCCTTATCCTCATTCTGGTCGGAATCCGATGCCGGAAGCAGCGGAGTGAGCGGACCTTGGAGCGTGGTCCTCACGCTCTCCCTCGTTGTCCTTTGGTGCTCGTGGCTCTACTACAAGAGATCAGACTCTAACTCGCGGCTGCCGCCAGGTCCACGCGGGCTCCCATTGGTCGGGAACCTTTTCTCTCTGGACCCGGAGCTCCACTCTTACTTTGCGGGCCTGGCCCACACTTACGGCCCAATCTACAAGCTCCGCCTCGGCTCCAAGCTCGGCATCGTCATCACCTCCCCCTCCGTCGCCCGCGAGGTCCTCAAGGACCATGACGTCATCTTCGCCAACCGCGACGTCCCCGCCGCGGGCTTGGCCTCCTCGTACGGCGGATCCGACATCGTGTGGACCCCGTACGGCCCGGAGTGGCGGAGGCTGCGGAAGGTCTGCGTGCTCAAGATGCTCAGCAACACCACGCTCGACTCGGTTCACGAGCTGCGGCGGAACCAGGTCAGGCGAACGGTCGGGTTATTCTACAGCCGGGTCGGGTCGCCGGTGGACGTGGGCGAGCAGATGTTCCTGAACGTGCTGAACGTGATCACGAACATGCTGTGGGGCGGGACGGTGCAGGACGAGGCCTCCGGGCTCGGGGCTGAGTTCCGGCAAGTGGTATCCGAGGGGACGGAGCTGCTGGCGAAGCCGAACGTTTCGGACTTTTATCCGGGCTTGGCCCGGTTTGATTTGCAAGGGGTGTTCAAGCAGATGGAGGGGTTAGGGAAGAGGATTGACGCGATATTCGAGAGAGTGATAGATCAACGGCTGAGGATGGAGAAGGAAGGCGCGAAGGAGGAGAATTATGATAAGCACGTGAGATGTGGAGTTATTGATGATTCTGGAGGGAACAATGAAATGCATGTGGATATGGTTGTGGGCGGGACGTACACATCCTCCAACACAATTGAATTTGCAATGTCGGAAGTTATGAACAAACCAGAAGTGTTACAAAAAGTCCAGCAAGAATTAGAAGCTGTAGTTGGCAAAAACAGCGTTGTAGAAGAGTCTCACATGCACAAGCTACCGTACTTATATGCTGTGATGAAAGAAACACTGCGTTTGCACCCAGCCCTGCCTCTGTTAGTCCCACATTGCCCAAGTGAGACATGCACTGTGGGGGGTTATACCATTCCAAAGGGATCTAGGATTTTTGTTAATGTTTGGGCTATACATAGAGACCCTTCTAGTTGGGAAAACCCATTGGAGTTTGATCCAACTAGATTCTTGGATGGTAAATGGGATTACAGTGGGAGTGACTTCAAGTATTTTCCTTTTGGGTCCGGGAGAAGAATATGTGCAGGGATAGCATTGGCTGACCGGATGGTGATGCATTCGCTTGCTACACTGCTGCATTCTTTTGATTGGAAATTGCCACAGGGTGAGAAGTTGATGGTGTTGCAGGTCTGTGGTGTTGATGGAGTCTGGGTCTTCATGTTTCTTGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

504

Amino Acids

56.28

Weight (kDa)

6.04

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	56 - 485	2.5e-91	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AatII	GACGTC	2 cut(s)	351, 372
Acc36I	ACCTGC	1 cut(s)	1456
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	4 cut(s)	399, 412, 1213, 1271
AcsI	RAATTY	1 cut(s)	974
AcvI	CACGTG	1 cut(s)	880
AcyI	GRCGYC	2 cut(s)	348, 369
AdeI	CACNNNGTG	1 cut(s)	1445
AfaI	GTAC	4 cut(s)	398, 428, 953, 1094
AfiI	CCNNNNNNNGG	6 cut(s)	39, 194, 379, 380, 660, 679
AgsI	TTSAA	3 cut(s)	769, 974, 1327
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	3 cut(s)	169, 243, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	1029, 1061
AluBI	AGCT	7 cut(s)	223, 274, 292, 508, 700, 1040, 1087
AluI	AGCT	7 cut(s)	223, 274, 292, 508, 700, 1040, 1087
Alw21I	GWGCWC	3 cut(s)	125, 225, 468
Alw26I	GTCTC	3 cut(s)	1077, 1163, 1236
AlwI	GGATC	4 cut(s)	399, 412, 1213, 1271
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	7 cut(s)	241, 246, 259, 387, 430, 648, 741
ApeKI	GCWGC	6 cut(s)	63, 163, 448, 508, 700, 1414
ApoI	RAATTY	1 cut(s)	974
ArsI	GACNNNNNNTTYG	4 cut(s)	338, 370, 791, 823
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	854
AsuC2I	CCSGG	7 cut(s)	218, 434, 554, 655, 735, 745, 1348
AsuHPI	GGTGA	3 cut(s)	298, 1402, 1457
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	8 cut(s)	77, 91, 173, 214, 331, 340, 420, 1344
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	3 cut(s)	186, 225, 660
BauI	CACGAG	2 cut(s)	124, 503
BbrPI	CACGTG	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	1486
Bbv12I	GWGCWC	3 cut(s)	125, 225, 468
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	6 cut(s)	75, 150, 435, 495, 687, 1401
BccI	CCATC	6 cut(s)	769, 832, 1289, 1381, 1450, 1475
BceAI	ACGGC	4 cut(s)	274, 415, 445, 845
BciT130I	CCWGG	3 cut(s)	171, 245, 521
BciVI	GTATCC	1 cut(s)	694
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	7 cut(s)	218, 434, 554, 655, 735, 745, 1348
BcoDI	GTCTC	3 cut(s)	1077, 1163, 1236
BfaI	CTAG	4 cut(s)	1209, 1251, 1284, 1513
BfmI	CTRYAG	2 cut(s)	547, 1041
BfuAI	ACCTGC	1 cut(s)	1456
BfuI	GTATCC	1 cut(s)	694
BlpI	GCTNAGC	1 cut(s)	476
Bme18I	GGWCC	8 cut(s)	77, 91, 173, 214, 331, 340, 420, 1344
BmeT110I	CYCGRG	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	574
BmiI	GGNNCC	8 cut(s)	185, 200, 216, 286, 406, 422, 518, 1345
BmsI	GCATC	4 cut(s)	43, 306, 462, 1383
BpiI	GAAGAC	1 cut(s)	1486
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	320, 452
BpuMI	CCSGG	7 cut(s)	218, 434, 554, 655, 735, 745, 1348
BsaAI	YACGTR	1 cut(s)	880
BsaHI	GRCGYC	2 cut(s)	348, 369
BsaI	GGTCTC	1 cut(s)	1236
BsaJI	CCNNGG	4 cut(s)	80, 280, 378, 687
BsaWI	WCCGGW	1 cut(s)	1383
BsaXI	ACNNNNNCTCC	8 cut(s)	168, 198, 635, 665, 944, 974, 1476, 1506
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 194, 379, 380, 660, 679
Bse118I	RCCGGY	1 cut(s)	565
Bse3DI	GCAATG	2 cut(s)	987, 1156
BseBI	CCWGG	3 cut(s)	171, 245, 521
BseDI	CCNNGG	4 cut(s)	80, 280, 378, 687
BseGI	GGATG	4 cut(s)	843, 956, 1300, 1392
BseLI	CCNNNNNNNGG	6 cut(s)	39, 194, 379, 380, 660, 679
BseMI	GCAATG	2 cut(s)	987, 1156
BseMII	CTCAG	3 cut(s)	490, 657, 824
BseRI	GAGGAG	2 cut(s)	382, 875
BseXI	GCAGC	6 cut(s)	75, 150, 435, 495, 687, 1401
BseYI	CCCAGC	1 cut(s)	1132
BsgI	GTGCAG	2 cut(s)	659, 1383
Bsh1236I	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	7 cut(s)	243, 248, 261, 389, 432, 650, 743
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	3 cut(s)	125, 225, 468
BsiHKCI	CYCGRG	1 cut(s)	659
BsiWI	CGTACG	2 cut(s)	396, 426
BslFI	GGGAC	5 cut(s)	356, 646, 706, 961, 1136
BslI	CCNNNNNNNGG	6 cut(s)	39, 194, 379, 380, 660, 679
BsmAI	GTCTC	3 cut(s)	1077, 1163, 1236
BsmFI	GGGAC	5 cut(s)	356, 646, 706, 961, 1136
BsmI	GAATGC	2 cut(s)	1396, 1417
BsnI	GGCC	7 cut(s)	243, 248, 261, 389, 432, 650, 743
Bso31I	GGTCTC	1 cut(s)	1236
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	5 cut(s)	125, 186, 225, 468, 660
Bsp143I	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
Bsp1720I	GCTNAGC	1 cut(s)	476
BspANI	GGCC	7 cut(s)	243, 248, 261, 389, 432, 650, 743
BspCNI	CTCAG	3 cut(s)	489, 658, 825
BspFNI	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
BspLI	GGNNCC	8 cut(s)	185, 200, 216, 286, 406, 422, 518, 1345
BspMI	ACCTGC	1 cut(s)	1456
BspPI	GGATC	4 cut(s)	399, 412, 1213, 1271
BspTNI	GGTCTC	1 cut(s)	1236
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	987, 1156
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	4 cut(s)	80, 280, 378, 687
BssMI	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
BssNI	GRCGYC	2 cut(s)	348, 369
BssSI	CACGAG	2 cut(s)	124, 503
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	2 cut(s)	124, 503
Bst2UI	CCWGG	3 cut(s)	171, 245, 521
Bst4CI	ACNGT	5 cut(s)	535, 637, 1092, 1180, 1313
Bst6I	CTCTTC	2 cut(s)	785, 1062
BstACI	GRCGYC	2 cut(s)	348, 369
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	8 cut(s)	182, 241, 325, 382, 464, 581, 705, 1404
BstDEI	CTNAG	3 cut(s)	476, 666, 833
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	843, 956, 1300, 1392
BstFNI	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	6 cut(s)	146, 407, 612, 826, 1208, 1279
BstMAI	GTCTC	3 cut(s)	1077, 1163, 1236
BstMBI	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	9 cut(s)	72, 166, 245, 386, 448, 472, 709, 1056, 1370
BstNI	CCWGG	3 cut(s)	171, 245, 521
BstNSI	RCATGY	4 cut(s)	622, 929, 1081, 1176
BstSFI	CTRYAG	2 cut(s)	547, 1041
BstUI	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
BstV1I	GCAGC	6 cut(s)	75, 150, 435, 495, 687, 1401
BstV2I	GAAGAC	1 cut(s)	1486
BstX2I	RGATCY	2 cut(s)	404, 1205
BstYI	RGATCY	2 cut(s)	404, 1205
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	7 cut(s)	243, 248, 261, 389, 432, 650, 743
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	843, 956, 1300, 1392
BtsI	GCAGTG	2 cut(s)	1118, 1409
BtsIMutI	CAGTG	4 cut(s)	1118, 1176, 1318, 1409
BveI	ACCTGC	1 cut(s)	1456
Cac8I	GCNNGC	8 cut(s)	182, 241, 325, 382, 464, 581, 705, 1404
CfoI	GCGC	1 cut(s)	854
Cfr10I	RCCGGY	1 cut(s)	565
Cfr42I	CCGCGG	1 cut(s)	381
CseI	GACGC	1 cut(s)	809
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	4 cut(s)	397, 427, 952, 1093
CviAII	CATG	6 cut(s)	344, 619, 926, 1078, 1173, 1498
CviQI	GTAC	4 cut(s)	397, 427, 952, 1093
DdeI	CTNAG	3 cut(s)	476, 666, 833
DpnI	GATC	6 cut(s)	145, 406, 611, 825, 1207, 1278
DpnII	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
DraIII	CACNNNGTG	1 cut(s)	1445
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	785, 1062
EarI	CTCTTC	2 cut(s)	785, 1062
EciI	GGCGGA	4 cut(s)	266, 417, 457, 529
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	650
Eco24I	GRGCYC	3 cut(s)	186, 225, 660
Eco31I	GGTCTC	1 cut(s)	1236
Eco47I	GGWCC	8 cut(s)	77, 91, 173, 214, 331, 340, 420, 1344
Eco53kI	GAGCTC	1 cut(s)	223
Eco72I	CACGTG	1 cut(s)	880
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	169, 243, 519
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	2 cut(s)	927, 1398
EcoT38I	GRGCYC	3 cut(s)	186, 225, 660
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	6 cut(s)	347, 622, 929, 1081, 1176, 1501
FaqI	GGGAC	5 cut(s)	356, 646, 706, 961, 1136
FatI	CATG	6 cut(s)	343, 618, 925, 1077, 1172, 1497
FauI	CCCGC	7 cut(s)	173, 232, 332, 373, 382, 623, 938
FbaI	TGATCA	1 cut(s)	609
FokI	GGATG	4 cut(s)	850, 943, 1307, 1399
FriOI	GRGCYC	3 cut(s)	186, 225, 660
FspBI	CTAG	4 cut(s)	1209, 1251, 1284, 1513
GlaI	GCGC	1 cut(s)	853
GsaI	CCCAGC	1 cut(s)	1136
GsuI	CTGGAG	1 cut(s)	927
HaeIII	GGCC	7 cut(s)	243, 248, 261, 389, 432, 650, 743
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	854
Hin1I	GRCGYC	2 cut(s)	348, 369
Hin1II	CATG	6 cut(s)	347, 622, 929, 1081, 1176, 1501
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HinfI	GANTC	9 cut(s)	5, 11, 47, 149, 494, 902, 1070, 1287, 1485
HphI	GGTGA	3 cut(s)	298, 1402, 1457
Hpy166II	GTNNAC	6 cut(s)	176, 420, 502, 571, 954, 1510
Hpy188I	TCNGA	8 cut(s)	10, 46, 52, 148, 409, 688, 724, 988
Hpy188III	TCNNGA	8 cut(s)	196, 212, 469, 503, 592, 613, 811, 906
Hpy8I	GTNNAC	6 cut(s)	176, 420, 502, 571, 954, 1510
Hpy99I	CGWCG	2 cut(s)	323, 371
HpyAV	CCTTC	5 cut(s)	448, 838, 842, 850, 1257
HpyCH4III	ACNGT	5 cut(s)	535, 637, 1092, 1180, 1313
HpyCH4IV	ACGT	8 cut(s)	348, 369, 573, 597, 606, 717, 879, 950
HpyF10VI	GCNNNNNNNGC	9 cut(s)	72, 166, 245, 386, 448, 472, 709, 1056, 1370
HpyF3I	CTNAG	3 cut(s)	476, 666, 833
HpySE526I	ACGT	8 cut(s)	348, 369, 573, 597, 606, 717, 879, 950
Hsp92I	GRCGYC	2 cut(s)	348, 369
Hsp92II	CATG	6 cut(s)	347, 622, 929, 1081, 1176, 1501
HspAI	GCGC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	609
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
LmnI	GCTCC	7 cut(s)	84, 189, 220, 228, 279, 290, 697
Lsp1109I	GCAGC	6 cut(s)	75, 150, 435, 495, 687, 1401
LweI	GCATC	4 cut(s)	43, 306, 462, 1383
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	4 cut(s)	1209, 1251, 1284, 1513
MaeII	ACGT	8 cut(s)	348, 369, 573, 597, 606, 717, 879, 950
MaeIII	GTNAC	2 cut(s)	1011, 1319
MalI	GATC	6 cut(s)	145, 406, 611, 825, 1207, 1278
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
MboII	GAAGA	5 cut(s)	346, 802, 1079, 1365, 1486
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	2 cut(s)	404, 1205
MhlI	GDGCHC	5 cut(s)	125, 186, 225, 468, 660
MluCI	AATT	5 cut(s)	865, 969, 974, 1031, 1433
MlyI	GAGTC	4 cut(s)	143, 488, 1079, 1494
MmeI	TCCRAC	5 cut(s)	24, 432, 966, 987, 1304
Mph1103I	ATGCAT	2 cut(s)	927, 1398
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	1221
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	66, 380
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	2 cut(s)	1396, 1417
MvaI	CCWGG	3 cut(s)	171, 245, 521
MvnI	CGCG	7 cut(s)	160, 180, 327, 366, 380, 803, 854
MwoI	GCNNNNNNNGC	9 cut(s)	72, 166, 245, 386, 448, 472, 709, 1056, 1370
NciI	CCSGG	7 cut(s)	218, 434, 554, 655, 735, 745, 1348
NdeII	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
NlaIII	CATG	6 cut(s)	347, 622, 929, 1081, 1176, 1501
NlaIV	GGNNCC	8 cut(s)	185, 200, 216, 286, 406, 422, 518, 1345
NmeAIII	GCCGAG	2 cut(s)	261, 273
NmuCI	GTSAC	1 cut(s)	1319
NsiI	ATGCAT	2 cut(s)	927, 1398
NspI	RCATGY	4 cut(s)	622, 929, 1081, 1176
PceI	AGGCCT	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	4 cut(s)	363, 405, 603, 807
PctI	GAATGC	2 cut(s)	1396, 1417
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	5 cut(s)	5, 11, 47, 902, 1287
Pfl23II	CGTACG	2 cut(s)	396, 426
PfoI	TCCNGGA	1 cut(s)	1346
PleI	GAGTC	4 cut(s)	143, 488, 1078, 1493
PmaCI	CACGTG	1 cut(s)	880
PmlI	CACGTG	1 cut(s)	880
PpsI	GAGTC	4 cut(s)	143, 488, 1078, 1493
Ppu21I	YACGTR	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	169, 243, 519
PspCI	CACGTG	1 cut(s)	880
PspFI	CCCAGC	1 cut(s)	1132
PspGI	CCWGG	3 cut(s)	169, 243, 519
PspLI	CGTACG	2 cut(s)	396, 426
PspN4I	GGNNCC	8 cut(s)	185, 200, 216, 286, 406, 422, 518, 1345
PspPPI	RGGWCCY	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	404, 1205
RsaI	GTAC	4 cut(s)	398, 428, 953, 1094
RsaNI	GTAC	4 cut(s)	397, 427, 952, 1093
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	225
SacII	CCGCGG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	1221
Sau3AI	GATC	6 cut(s)	143, 404, 609, 823, 1205, 1276
SchI	GAGTC	4 cut(s)	143, 488, 1079, 1494
SduI	GDGCHC	5 cut(s)	125, 186, 225, 468, 660
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	4 cut(s)	43, 306, 462, 1383
SfcI	CTRYAG	2 cut(s)	547, 1041
Sfr303I	CCGCGG	1 cut(s)	381
SgrAI	CRCCGGYG	1 cut(s)	565
SgrBI	CCGCGG	1 cut(s)	381
SinI	GGWCC	8 cut(s)	77, 91, 173, 214, 331, 340, 420, 1344
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	2 cut(s)	335, 467
SmoI	CTYRAG	2 cut(s)	335, 467
Sse9I	AATT	5 cut(s)	865, 969, 974, 1031, 1433
SseBI	AGGCCT	1 cut(s)	650
SspMI	CTAG	4 cut(s)	1209, 1251, 1284, 1513
SstI	GAGCTC	1 cut(s)	225
StuI	AGGCCT	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	5 cut(s)	535, 637, 1092, 1180, 1313
TaiI	ACGT	8 cut(s)	351, 372, 576, 600, 609, 720, 882, 953
TaqI	TCGA	2 cut(s)	492, 810
TasI	AATT	5 cut(s)	865, 969, 974, 1031, 1433
TauI	GCSGC	4 cut(s)	163, 169, 380, 514
TfiI	GAWTC	5 cut(s)	5, 11, 47, 902, 1287
Tru1I	TTAA	1 cut(s)	1221
Tru9I	TTAA	1 cut(s)	1221
TscAI	CASTG	4 cut(s)	1125, 1183, 1318, 1416
TseFI	GTSAC	1 cut(s)	1319
TseI	GCWGC	6 cut(s)	63, 163, 448, 508, 700, 1414
Tsp45I	GTSAC	1 cut(s)	1319
TspDTI	ATGAA	4 cut(s)	933, 1010, 1124, 1486
TspGWI	ACGGA	2 cut(s)	307, 710
TspRI	CASTG	4 cut(s)	1125, 1183, 1318, 1416
VpaK11BI	GGWCC	8 cut(s)	77, 91, 173, 214, 331, 340, 420, 1344
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	4 cut(s)	622, 929, 1081, 1176
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	4 cut(s)	1209, 1251, 1284, 1513
ZraI	GACGTC	2 cut(s)	349, 370
Zsp2I	ATGCAT	2 cut(s)	927, 1398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.