Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012276.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

40513 .. 41124

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012276.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaatccgattcctattacgcttccttatcctcatcggaatccgatgccggaagcagcggagtgagcggaccttggagcgtggtcctcgcgctctccctcgttatcctttggtgctcgtggctctactgcaagagatcagactctaacgcgccgctgccgctaggtccacgcgggctcccattggtcgggaaccttttctctctggacccggagctccactcttacttcgcgggcctggcccacgcttacggcccagtctacaagctccgcctcggctccaagctcggcatcgtcatcacctccccctccgtcgcccgcgaggtcctcaaggaccatgacgtcatcttcgccaaccgcgacgtccccgccgcaggcctggcctcctcgtacggcggatccgacatcgtgtggaccccgtacggcccggagtggcggatgctgcggaaggtctgcgttctcaagatgctcagcaacaccacgctcgactcggttcacgagctgcggcggaaccaggtcaggcgaacggtctggttattctacagtcgggtcgggtctccggtggacgtaggcgagcagatgttcctgacagtggcggaaccaggattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

203

Amino Acids

22.23

Weight (kDa)

6.9

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AatII	GACGTC	2 cut(s)	345, 366
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
AclWI	GGATC	2 cut(s)	393, 406
AcyI	GRCGYC	2 cut(s)	342, 363
AfaI	GTAC	2 cut(s)	392, 422
AfiI	CCNNNNNNNGG	3 cut(s)	188, 374, 592
AjnI	CCWGG	4 cut(s)	237, 378, 513, 601
AluBI	AGCT	4 cut(s)	217, 268, 286, 502
AluI	AGCT	4 cut(s)	217, 268, 286, 502
Alw21I	GWGCWC	2 cut(s)	119, 219
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	393, 406
AoxI	GGCC	6 cut(s)	235, 240, 253, 376, 381, 424
ApeKI	GCWGC	4 cut(s)	57, 157, 442, 502
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	94, 154
AsuC2I	CCSGG	2 cut(s)	212, 428
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	7 cut(s)	71, 85, 167, 208, 325, 334, 414
BamHI	GGATCC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	180, 219
BauI	CACGAG	2 cut(s)	118, 497
Bbv12I	GWGCWC	2 cut(s)	119, 219
BbvI	GCAGC	4 cut(s)	69, 144, 429, 489
BceAI	ACGGC	3 cut(s)	268, 409, 439
BciT130I	CCWGG	4 cut(s)	239, 380, 515, 603
BcnI	CCSGG	2 cut(s)	212, 428
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	541
BisI	GCNGC	8 cut(s)	58, 155, 158, 161, 372, 443, 503, 506
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	8 cut(s)	59, 156, 159, 162, 373, 444, 504, 507
Bme1390I	CCNGG	6 cut(s)	212, 239, 380, 428, 515, 603
Bme18I	GGWCC	7 cut(s)	71, 85, 167, 208, 325, 334, 414
BmiI	GGNNCC	8 cut(s)	179, 194, 210, 280, 400, 416, 512, 600
BmrFI	CCNGG	6 cut(s)	212, 239, 380, 428, 515, 603
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	37, 300, 429, 456
BmuI	ACTGGG	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	314, 446
BpuMI	CCSGG	2 cut(s)	212, 428
BsaHI	GRCGYC	2 cut(s)	342, 363
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	74, 274
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 374, 592
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	4 cut(s)	239, 380, 515, 603
BseDI	CCNNGG	2 cut(s)	74, 274
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	188, 374, 592
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	69, 144, 429, 489
Bsh1236I	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
BshFI	GGCC	6 cut(s)	237, 242, 255, 378, 383, 426
BsiHKAI	GWGCWC	2 cut(s)	119, 219
BsiSI	CCGG	4 cut(s)	51, 212, 428, 560
BsiWI	CGTACG	2 cut(s)	390, 420
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	188, 374, 592
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	6 cut(s)	237, 242, 255, 378, 383, 426
Bso31I	GGTCTC	1 cut(s)	561
Bsp1286I	GDGCHC	3 cut(s)	119, 180, 219
Bsp143I	GATC	2 cut(s)	137, 398
Bsp1720I	GCTNAGC	1 cut(s)	470
BspANI	GGCC	6 cut(s)	237, 242, 255, 378, 383, 426
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
BspLI	GGNNCC	8 cut(s)	179, 194, 210, 280, 400, 416, 512, 600
BspPI	GGATC	2 cut(s)	393, 406
BspTNI	GGTCTC	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	74, 274
BssMI	GATC	2 cut(s)	137, 398
BssNI	GRCGYC	2 cut(s)	342, 363
BssSI	CACGAG	2 cut(s)	118, 497
BssT1I	CCWWGG	1 cut(s)	74
Bst2BI	CACGAG	2 cut(s)	118, 497
Bst2UI	CCWGG	4 cut(s)	239, 380, 515, 603
Bst4CI	ACNGT	3 cut(s)	529, 545, 592
BstACI	GRCGYC	2 cut(s)	342, 363
BstC8I	GCNNGC	5 cut(s)	176, 235, 319, 376, 575
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
BstHHI	GCGC	2 cut(s)	94, 154
BstKTI	GATC	2 cut(s)	140, 401
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	137, 398
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 160, 239, 380, 442
BstNI	CCWGG	4 cut(s)	239, 380, 515, 603
BstSCI	CCNGG	6 cut(s)	210, 237, 378, 426, 513, 601
BstSFI	CTRYAG	1 cut(s)	541
BstUI	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
BstV1I	GCAGC	4 cut(s)	69, 144, 429, 489
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	6 cut(s)	237, 242, 255, 378, 383, 426
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	5 cut(s)	176, 235, 319, 376, 575
CfoI	GCGC	2 cut(s)	94, 154
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	391, 421
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	391, 421
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	2 cut(s)	139, 400
DpnII	GATC	2 cut(s)	137, 398
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EciI	GGCGGA	5 cut(s)	260, 411, 451, 523, 611
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	180, 219
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	7 cut(s)	71, 85, 167, 208, 325, 334, 414
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	4 cut(s)	237, 378, 513, 601
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	2 cut(s)	180, 219
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	341
FaiI	YATR	1 cut(s)	339
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	337
FauI	CCCGC	4 cut(s)	167, 226, 326, 376
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	8 cut(s)	58, 155, 158, 161, 372, 443, 503, 506
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	2 cut(s)	180, 219
Fsp4HI	GCNGC	8 cut(s)	58, 155, 158, 161, 372, 443, 503, 506
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	93, 153
GluI	GCNGC	8 cut(s)	58, 155, 158, 161, 372, 443, 503, 506
HaeIII	GGCC	6 cut(s)	237, 242, 255, 378, 383, 426
HapII	CCGG	4 cut(s)	51, 212, 428, 560
HhaI	GCGC	2 cut(s)	94, 154
Hin1I	GRCGYC	2 cut(s)	342, 363
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	2 cut(s)	92, 152
HinP1I	GCGC	2 cut(s)	92, 152
HinfI	GANTC	5 cut(s)	5, 11, 41, 143, 488
HpaII	CCGG	4 cut(s)	51, 212, 428, 560
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	5 cut(s)	170, 262, 414, 496, 565
Hpy188I	TCNGA	5 cut(s)	10, 40, 46, 142, 403
Hpy188III	TCNNGA	5 cut(s)	190, 206, 463, 497, 586
Hpy8I	GTNNAC	5 cut(s)	170, 262, 414, 496, 565
Hpy99I	CGWCG	2 cut(s)	317, 365
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	3 cut(s)	529, 545, 592
HpyCH4IV	ACGT	3 cut(s)	342, 363, 567
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 160, 239, 380, 442
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	3 cut(s)	342, 363, 567
Hsp92I	GRCGYC	2 cut(s)	342, 363
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	2 cut(s)	92, 152
Kzo9I	GATC	2 cut(s)	137, 398
LmnI	GCTCC	6 cut(s)	78, 183, 214, 222, 273, 284
Lsp1109I	GCAGC	4 cut(s)	69, 144, 429, 489
LweI	GCATC	4 cut(s)	37, 300, 429, 456
MabI	ACCWGGT	1 cut(s)	513
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	3 cut(s)	342, 363, 567
MalI	GATC	2 cut(s)	139, 400
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	2 cut(s)	137, 398
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	119, 180, 219
MlyI	GAGTC	2 cut(s)	137, 482
MmeI	TCCRAC	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	610
MspA1I	CMGCKG	2 cut(s)	60, 157
MspI	CCGG	4 cut(s)	51, 212, 428, 560
MspR9I	CCNGG	6 cut(s)	212, 239, 380, 428, 515, 603
MvaI	CCWGG	4 cut(s)	239, 380, 515, 603
MvnI	CGCG	6 cut(s)	92, 152, 174, 233, 321, 360
MwoI	GCNNNNNNNGC	5 cut(s)	66, 160, 239, 380, 442
NciI	CCSGG	2 cut(s)	212, 428
NdeII	GATC	2 cut(s)	137, 398
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	8 cut(s)	179, 194, 210, 280, 400, 416, 512, 600
NmeAIII	GCCGAG	2 cut(s)	255, 267
PceI	AGGCCT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 399
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	5, 11, 41
Pfl23II	CGTACG	2 cut(s)	390, 420
PkrI	GCNGC	8 cut(s)	59, 156, 159, 162, 373, 444, 504, 507
PleI	GAGTC	2 cut(s)	137, 482
PpsI	GAGTC	2 cut(s)	137, 482
PpuMI	RGGWCCY	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	4 cut(s)	237, 378, 513, 601
PspGI	CCWGG	4 cut(s)	237, 378, 513, 601
PspLI	CGTACG	2 cut(s)	390, 420
PspN4I	GGNNCC	8 cut(s)	179, 194, 210, 280, 400, 416, 512, 600
PspPPI	RGGWCCY	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	392, 422
RsaNI	GTAC	2 cut(s)	391, 421
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	8 cut(s)	58, 155, 158, 161, 372, 443, 503, 506
Sau3AI	GATC	2 cut(s)	137, 398
SchI	GAGTC	2 cut(s)	137, 482
ScrFI	CCNGG	6 cut(s)	212, 239, 380, 428, 515, 603
SduI	GDGCHC	3 cut(s)	119, 180, 219
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	4 cut(s)	37, 300, 429, 456
SfcI	CTRYAG	1 cut(s)	541
SinI	GGWCC	7 cut(s)	71, 85, 167, 208, 325, 334, 414
SmlI	CTYRAG	2 cut(s)	329, 461
SmoI	CTYRAG	2 cut(s)	329, 461
SseBI	AGGCCT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	6 cut(s)	210, 237, 378, 426, 513, 601
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	529, 545, 592
TaiI	ACGT	3 cut(s)	345, 366, 570
TaqI	TCGA	1 cut(s)	486
TauI	GCSGC	4 cut(s)	157, 163, 374, 508
TfiI	GAWTC	3 cut(s)	5, 11, 41
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TscAI	CASTG	1 cut(s)	597
TseI	GCWGC	4 cut(s)	57, 157, 442, 502
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	7 cut(s)	71, 85, 167, 208, 325, 334, 414
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	164
ZraI	GACGTC	2 cut(s)	343, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.